Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0926 and EX28DRAFT_0927 are separated by 282 nucleotides EX28DRAFT_0927 and EX28DRAFT_0928 are separated by 46 nucleotides EX28DRAFT_0928 and EX28DRAFT_0929 are separated by 122 nucleotides EX28DRAFT_0929 and EX28DRAFT_0930 overlap by 4 nucleotides
EX28DRAFT_0926: EX28DRAFT_0926 - Predicted Fe-S-cluster oxidoreductase, at 926,021 to 926,425
_0926
EX28DRAFT_0927: EX28DRAFT_0927 - Outer membrane protein W, at 926,708 to 927,340
_0927
EX28DRAFT_0928: EX28DRAFT_0928 - hypothetical protein, at 927,387 to 927,728
_0928
EX28DRAFT_0929: EX28DRAFT_0929 - Predicted redox protein, regulator of disulfide bond formation, at 927,851 to 928,084
_0929
EX28DRAFT_0930: EX28DRAFT_0930 - Predicted transporter component, at 928,081 to 929,292
_0930
Position (kb) 927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 926.417 kb on - strand at 926.479 kb on - strand at 926.650 kb on - strand at 926.650 kb on - strand at 926.653 kb on - strand at 926.666 kb on + strand at 926.736 kb on + strand at 926.736 kb on + strand at 926.739 kb on + strand at 926.788 kb on + strand, within EX28DRAFT_0927 at 926.807 kb on - strand, within EX28DRAFT_0927 at 926.857 kb on + strand, within EX28DRAFT_0927 at 926.857 kb on + strand, within EX28DRAFT_0927 at 926.857 kb on + strand, within EX28DRAFT_0927 at 926.880 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.898 kb on - strand, within EX28DRAFT_0927 at 926.898 kb on - strand, within EX28DRAFT_0927 at 926.900 kb on - strand, within EX28DRAFT_0927 at 927.059 kb on + strand, within EX28DRAFT_0927 at 927.059 kb on + strand, within EX28DRAFT_0927 at 927.061 kb on + strand, within EX28DRAFT_0927 at 927.231 kb on - strand, within EX28DRAFT_0927 at 927.252 kb on + strand, within EX28DRAFT_0927 at 927.252 kb on + strand, within EX28DRAFT_0927 at 927.289 kb on + strand at 927.290 kb on - strand at 927.309 kb on + strand at 927.309 kb on + strand at 927.313 kb on + strand at 927.313 kb on + strand at 927.314 kb on - strand at 927.314 kb on - strand at 927.454 kb on + strand, within EX28DRAFT_0928 at 927.455 kb on - strand, within EX28DRAFT_0928 at 927.455 kb on - strand, within EX28DRAFT_0928 at 927.455 kb on - strand, within EX28DRAFT_0928 at 927.456 kb on + strand, within EX28DRAFT_0928 at 927.456 kb on + strand, within EX28DRAFT_0928 at 927.456 kb on + strand, within EX28DRAFT_0928 at 927.456 kb on + strand, within EX28DRAFT_0928 at 927.456 kb on + strand, within EX28DRAFT_0928 at 927.457 kb on - strand, within EX28DRAFT_0928 at 927.457 kb on - strand, within EX28DRAFT_0928 at 927.461 kb on - strand, within EX28DRAFT_0928 at 927.461 kb on - strand, within EX28DRAFT_0928 at 927.461 kb on - strand, within EX28DRAFT_0928 at 927.595 kb on + strand, within EX28DRAFT_0928 at 927.638 kb on + strand, within EX28DRAFT_0928 at 927.639 kb on - strand, within EX28DRAFT_0928 at 927.721 kb on + strand at 927.722 kb on - strand at 927.770 kb on - strand at 928.111 kb on - strand at 928.182 kb on - strand at 928.182 kb on - strand at 928.352 kb on + strand, within EX28DRAFT_0930 at 928.425 kb on + strand, within EX28DRAFT_0930 at 928.425 kb on + strand, within EX28DRAFT_0930 at 928.470 kb on - strand, within EX28DRAFT_0930 at 928.479 kb on + strand, within EX28DRAFT_0930 at 928.513 kb on - strand, within EX28DRAFT_0930 at 928.566 kb on + strand, within EX28DRAFT_0930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 926,417 - +0.2 926,479 - -0.1 926,650 - -0.9 926,650 - -4.0 926,653 - -0.2 926,666 + -0.1 926,736 + -0.3 926,736 + -0.1 926,739 + -0.4 926,788 + EX28DRAFT_0927 0.13 +0.3 926,807 - EX28DRAFT_0927 0.16 -0.3 926,857 + EX28DRAFT_0927 0.24 +0.2 926,857 + EX28DRAFT_0927 0.24 +0.0 926,857 + EX28DRAFT_0927 0.24 -0.4 926,880 + EX28DRAFT_0927 0.27 -0.7 926,897 + EX28DRAFT_0927 0.30 -0.4 926,897 + EX28DRAFT_0927 0.30 -0.2 926,897 + EX28DRAFT_0927 0.30 -0.5 926,897 + EX28DRAFT_0927 0.30 -0.4 926,898 - EX28DRAFT_0927 0.30 +0.2 926,898 - EX28DRAFT_0927 0.30 -1.8 926,900 - EX28DRAFT_0927 0.30 -2.0 927,059 + EX28DRAFT_0927 0.55 -0.3 927,059 + EX28DRAFT_0927 0.55 +0.6 927,061 + EX28DRAFT_0927 0.56 -0.6 927,231 - EX28DRAFT_0927 0.83 -0.6 927,252 + EX28DRAFT_0927 0.86 -0.3 927,252 + EX28DRAFT_0927 0.86 -0.2 927,289 + -0.5 927,290 - -0.5 927,309 + -0.4 927,309 + -0.0 927,313 + -0.3 927,313 + -0.3 927,314 - -1.2 927,314 - -0.7 927,454 + EX28DRAFT_0928 0.20 +1.1 927,455 - EX28DRAFT_0928 0.20 -0.2 927,455 - EX28DRAFT_0928 0.20 -0.5 927,455 - EX28DRAFT_0928 0.20 +3.6 927,456 + EX28DRAFT_0928 0.20 +0.3 927,456 + EX28DRAFT_0928 0.20 -0.6 927,456 + EX28DRAFT_0928 0.20 +0.3 927,456 + EX28DRAFT_0928 0.20 +0.7 927,456 + EX28DRAFT_0928 0.20 -0.1 927,457 - EX28DRAFT_0928 0.20 -0.8 927,457 - EX28DRAFT_0928 0.20 +3.7 927,461 - EX28DRAFT_0928 0.22 +1.7 927,461 - EX28DRAFT_0928 0.22 +0.6 927,461 - EX28DRAFT_0928 0.22 +0.4 927,595 + EX28DRAFT_0928 0.61 +1.0 927,638 + EX28DRAFT_0928 0.73 +1.0 927,639 - EX28DRAFT_0928 0.74 -0.2 927,721 + -1.2 927,722 - +0.2 927,770 - +0.9 928,111 - -0.3 928,182 - +2.6 928,182 - -0.0 928,352 + EX28DRAFT_0930 0.22 -0.2 928,425 + EX28DRAFT_0930 0.28 +1.5 928,425 + EX28DRAFT_0930 0.28 -0.8 928,470 - EX28DRAFT_0930 0.32 -0.2 928,479 + EX28DRAFT_0930 0.33 +0.5 928,513 - EX28DRAFT_0930 0.36 -0.3 928,566 + EX28DRAFT_0930 0.40 +0.7
Or see this region's nucleotide sequence