Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0919

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0917 and EX28DRAFT_0918 are separated by 76 nucleotidesEX28DRAFT_0918 and EX28DRAFT_0919 are separated by 162 nucleotidesEX28DRAFT_0919 and EX28DRAFT_0920 are separated by 610 nucleotides EX28DRAFT_0917: EX28DRAFT_0917 - Phage protein D, at 919,016 to 920,185 _0917 EX28DRAFT_0918: EX28DRAFT_0918 - Ogr/Delta-like zinc finger, at 920,262 to 920,483 _0918 EX28DRAFT_0919: EX28DRAFT_0919 - hypothetical protein, at 920,646 to 921,272 _0919 EX28DRAFT_0920: EX28DRAFT_0920 - Transcriptional regulators, at 921,883 to 922,836 _0920 Position (kb) 920 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 919.685 kb on + strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.759 kb on + strand, within EX28DRAFT_0917at 919.760 kb on - strand, within EX28DRAFT_0917at 919.825 kb on + strand, within EX28DRAFT_0917at 919.907 kb on + strand, within EX28DRAFT_0917at 919.908 kb on - strand, within EX28DRAFT_0917at 920.014 kb on - strand, within EX28DRAFT_0917at 920.059 kb on - strand, within EX28DRAFT_0917at 920.059 kb on - strand, within EX28DRAFT_0917at 920.114 kb on + strandat 920.381 kb on - strand, within EX28DRAFT_0918at 920.395 kb on + strand, within EX28DRAFT_0918at 920.488 kb on + strandat 920.489 kb on - strandat 920.489 kb on - strandat 920.565 kb on + strandat 920.573 kb on - strandat 920.672 kb on - strandat 920.673 kb on + strandat 920.741 kb on + strand, within EX28DRAFT_0919at 920.945 kb on + strand, within EX28DRAFT_0919at 920.964 kb on + strand, within EX28DRAFT_0919at 920.965 kb on - strand, within EX28DRAFT_0919at 920.965 kb on - strand, within EX28DRAFT_0919at 920.997 kb on - strand, within EX28DRAFT_0919at 921.010 kb on - strand, within EX28DRAFT_0919at 921.064 kb on + strand, within EX28DRAFT_0919at 921.086 kb on + strand, within EX28DRAFT_0919at 921.104 kb on + strand, within EX28DRAFT_0919at 921.129 kb on - strand, within EX28DRAFT_0919at 921.129 kb on - strand, within EX28DRAFT_0919at 921.151 kb on + strand, within EX28DRAFT_0919at 921.151 kb on + strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.166 kb on + strand, within EX28DRAFT_0919at 921.196 kb on + strand, within EX28DRAFT_0919at 921.234 kb on + strandat 921.235 kb on - strandat 921.304 kb on + strandat 921.305 kb on - strandat 921.305 kb on - strandat 921.437 kb on + strandat 921.437 kb on + strandat 921.452 kb on + strandat 921.452 kb on + strandat 921.499 kb on - strandat 921.499 kb on - strandat 921.501 kb on - strandat 921.534 kb on - strandat 921.573 kb on + strandat 921.594 kb on + strandat 921.595 kb on - strandat 921.595 kb on - strandat 921.642 kb on + strandat 921.661 kb on + strandat 921.661 kb on + strandat 921.681 kb on - strandat 921.681 kb on - strandat 921.821 kb on - strandat 921.823 kb on + strandat 921.823 kb on + strandat 921.882 kb on + strandat 921.882 kb on + strandat 921.883 kb on - strandat 921.983 kb on - strand, within EX28DRAFT_0920at 922.016 kb on + strand, within EX28DRAFT_0920at 922.022 kb on + strand, within EX28DRAFT_0920at 922.131 kb on + strand, within EX28DRAFT_0920

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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919,685 + EX28DRAFT_0917 0.57 +0.2
919,686 - EX28DRAFT_0917 0.57 -0.1
919,686 - EX28DRAFT_0917 0.57 -0.0
919,686 - EX28DRAFT_0917 0.57 -0.2
919,759 + EX28DRAFT_0917 0.64 -0.2
919,760 - EX28DRAFT_0917 0.64 -0.1
919,825 + EX28DRAFT_0917 0.69 +1.3
919,907 + EX28DRAFT_0917 0.76 -0.2
919,908 - EX28DRAFT_0917 0.76 -0.4
920,014 - EX28DRAFT_0917 0.85 +0.2
920,059 - EX28DRAFT_0917 0.89 -0.3
920,059 - EX28DRAFT_0917 0.89 -0.6
920,114 + +0.3
920,381 - EX28DRAFT_0918 0.54 -1.7
920,395 + EX28DRAFT_0918 0.60 -1.4
920,488 + -1.1
920,489 - -1.1
920,489 - -0.1
920,565 + -1.5
920,573 - -0.8
920,672 - -0.6
920,673 + -0.3
920,741 + EX28DRAFT_0919 0.15 -0.2
920,945 + EX28DRAFT_0919 0.48 +2.8
920,964 + EX28DRAFT_0919 0.51 +0.4
920,965 - EX28DRAFT_0919 0.51 +0.1
920,965 - EX28DRAFT_0919 0.51 -1.3
920,997 - EX28DRAFT_0919 0.56 -0.6
921,010 - EX28DRAFT_0919 0.58 +0.2
921,064 + EX28DRAFT_0919 0.67 -0.0
921,086 + EX28DRAFT_0919 0.70 +0.8
921,104 + EX28DRAFT_0919 0.73 +0.6
921,129 - EX28DRAFT_0919 0.77 -1.3
921,129 - EX28DRAFT_0919 0.77 -3.5
921,151 + EX28DRAFT_0919 0.81 +0.4
921,151 + EX28DRAFT_0919 0.81 +0.5
921,152 - EX28DRAFT_0919 0.81 -1.8
921,152 - EX28DRAFT_0919 0.81 +3.2
921,152 - EX28DRAFT_0919 0.81 -0.9
921,161 - EX28DRAFT_0919 0.82 -1.3
921,161 - EX28DRAFT_0919 0.82 -1.0
921,161 - EX28DRAFT_0919 0.82 +0.1
921,166 + EX28DRAFT_0919 0.83 +0.6
921,196 + EX28DRAFT_0919 0.88 -0.9
921,234 + -0.4
921,235 - -1.0
921,304 + +0.9
921,305 - -0.1
921,305 - -0.5
921,437 + -1.0
921,437 + +0.5
921,452 + +2.4
921,452 + -0.4
921,499 - -1.6
921,499 - -0.4
921,501 - -0.7
921,534 - -0.4
921,573 + -0.2
921,594 + +0.0
921,595 - +0.1
921,595 - +0.4
921,642 + -0.4
921,661 + -0.1
921,661 + -0.1
921,681 - -2.0
921,681 - -0.5
921,821 - -0.4
921,823 + -0.5
921,823 + -0.4
921,882 + +0.0
921,882 + -0.2
921,883 - -0.2
921,983 - EX28DRAFT_0920 0.10 +1.2
922,016 + EX28DRAFT_0920 0.14 +0.8
922,022 + EX28DRAFT_0920 0.15 -0.7
922,131 + EX28DRAFT_0920 0.26 +1.0

Or see this region's nucleotide sequence