Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0853

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0852 and EX28DRAFT_0853 overlap by 4 nucleotidesEX28DRAFT_0853 and EX28DRAFT_0854 overlap by 1 nucleotidesEX28DRAFT_0854 and EX28DRAFT_0855 overlap by 4 nucleotides EX28DRAFT_0852: EX28DRAFT_0852 - respiratory nitrate reductase beta subunit, at 864,543 to 866,078 _0852 EX28DRAFT_0853: EX28DRAFT_0853 - respiratory nitrate reductase chaperone NarJ, at 866,075 to 866,785 _0853 EX28DRAFT_0854: EX28DRAFT_0854 - respiratory nitrate reductase, gamma subunit, at 866,785 to 867,462 _0854 EX28DRAFT_0855: EX28DRAFT_0855 - Predicted permease, DMT superfamily, at 867,459 to 868,355 _0855 Position (kb) 866 867Strain fitness (log2 ratio) -1 0 1 2 3at 865.075 kb on - strand, within EX28DRAFT_0852at 865.144 kb on - strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.602 kb on + strand, within EX28DRAFT_0852at 865.691 kb on + strand, within EX28DRAFT_0852at 865.691 kb on + strand, within EX28DRAFT_0852at 865.757 kb on + strand, within EX28DRAFT_0852at 865.763 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.974 kb on - strandat 866.227 kb on - strand, within EX28DRAFT_0853at 866.799 kb on + strandat 866.799 kb on + strandat 866.800 kb on - strandat 866.825 kb on - strandat 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854at 867.234 kb on + strand, within EX28DRAFT_0854at 867.235 kb on - strand, within EX28DRAFT_0854at 867.399 kb on + strandat 867.400 kb on - strandat 867.400 kb on - strandat 867.421 kb on + strandat 867.629 kb on + strand, within EX28DRAFT_0855at 867.630 kb on - strand, within EX28DRAFT_0855at 867.630 kb on - strand, within EX28DRAFT_0855at 867.680 kb on - strand, within EX28DRAFT_0855at 867.692 kb on - strand, within EX28DRAFT_0855at 867.692 kb on - strand, within EX28DRAFT_0855at 867.696 kb on - strand, within EX28DRAFT_0855at 867.705 kb on - strand, within EX28DRAFT_0855at 867.778 kb on - strand, within EX28DRAFT_0855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
remove
865,075 - EX28DRAFT_0852 0.35 -0.6
865,144 - EX28DRAFT_0852 0.39 +0.4
865,202 + EX28DRAFT_0852 0.43 -0.4
865,202 + EX28DRAFT_0852 0.43 -0.9
865,203 - EX28DRAFT_0852 0.43 -0.4
865,203 - EX28DRAFT_0852 0.43 +0.5
865,602 + EX28DRAFT_0852 0.69 +1.6
865,691 + EX28DRAFT_0852 0.75 -0.0
865,691 + EX28DRAFT_0852 0.75 +0.8
865,757 + EX28DRAFT_0852 0.79 +0.2
865,763 + EX28DRAFT_0852 0.79 +0.5
865,869 + EX28DRAFT_0852 0.86 -0.6
865,869 + EX28DRAFT_0852 0.86 +0.6
865,869 + EX28DRAFT_0852 0.86 -1.0
865,869 + EX28DRAFT_0852 0.86 +0.5
865,869 + EX28DRAFT_0852 0.86 +0.7
865,870 - EX28DRAFT_0852 0.86 -1.4
865,870 - EX28DRAFT_0852 0.86 +0.1
865,870 - EX28DRAFT_0852 0.86 -1.5
865,893 + EX28DRAFT_0852 0.88 -0.8
865,893 + EX28DRAFT_0852 0.88 +1.3
865,974 - -0.9
866,227 - EX28DRAFT_0853 0.21 +0.6
866,799 + +0.7
866,799 + +0.0
866,800 - +0.1
866,825 - -0.2
867,013 + EX28DRAFT_0854 0.34 +0.3
867,013 + EX28DRAFT_0854 0.34 +0.1
867,013 + EX28DRAFT_0854 0.34 +1.2
867,014 - EX28DRAFT_0854 0.34 +0.6
867,014 - EX28DRAFT_0854 0.34 +0.1
867,234 + EX28DRAFT_0854 0.66 +1.0
867,235 - EX28DRAFT_0854 0.66 -0.6
867,399 + +0.2
867,400 - +0.3
867,400 - -0.8
867,421 + +0.4
867,629 + EX28DRAFT_0855 0.19 -0.3
867,630 - EX28DRAFT_0855 0.19 +2.9
867,630 - EX28DRAFT_0855 0.19 -0.2
867,680 - EX28DRAFT_0855 0.25 +0.4
867,692 - EX28DRAFT_0855 0.26 +0.8
867,692 - EX28DRAFT_0855 0.26 -0.4
867,696 - EX28DRAFT_0855 0.26 -0.7
867,705 - EX28DRAFT_0855 0.27 +0.3
867,778 - EX28DRAFT_0855 0.36 -0.2

Or see this region's nucleotide sequence