Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0792

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0790 and EX28DRAFT_0791 are separated by 16 nucleotidesEX28DRAFT_0791 and EX28DRAFT_0792 are separated by 11 nucleotidesEX28DRAFT_0792 and EX28DRAFT_0793 are separated by 75 nucleotidesEX28DRAFT_0793 and EX28DRAFT_0794 are separated by 3 nucleotides EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222 _0790 EX28DRAFT_0791: EX28DRAFT_0791 - type VI secretion-associated protein, BMA_A0400 family, at 793,239 to 793,955 _0791 EX28DRAFT_0792: EX28DRAFT_0792 - type VI secretion-associated protein, ImpA family, at 793,967 to 794,983 _0792 EX28DRAFT_0793: EX28DRAFT_0793 - type VI secretion protein, VC_A0107 family, at 795,059 to 795,583 _0793 EX28DRAFT_0794: EX28DRAFT_0794 - type VI secretion protein, EvpB/VC_A0108 family, at 795,587 to 797,086 _0794 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 793.003 kb on - strandat 793.239 kb on - strandat 793.286 kb on - strandat 793.807 kb on - strand, within EX28DRAFT_0791at 793.863 kb on - strand, within EX28DRAFT_0791at 793.967 kb on - strandat 793.973 kb on - strandat 794.031 kb on - strandat 794.141 kb on + strand, within EX28DRAFT_0792at 794.142 kb on - strand, within EX28DRAFT_0792at 794.182 kb on - strand, within EX28DRAFT_0792at 794.328 kb on - strand, within EX28DRAFT_0792at 794.359 kb on + strand, within EX28DRAFT_0792at 794.670 kb on + strand, within EX28DRAFT_0792at 794.834 kb on + strand, within EX28DRAFT_0792at 794.835 kb on - strand, within EX28DRAFT_0792at 794.846 kb on + strand, within EX28DRAFT_0792at 794.905 kb on + strandat 794.906 kb on - strandat 795.097 kb on + strandat 795.098 kb on - strandat 795.098 kb on - strandat 795.133 kb on - strand, within EX28DRAFT_0793at 795.140 kb on + strand, within EX28DRAFT_0793at 795.140 kb on + strand, within EX28DRAFT_0793at 795.141 kb on - strand, within EX28DRAFT_0793at 795.141 kb on - strand, within EX28DRAFT_0793at 795.141 kb on - strand, within EX28DRAFT_0793at 795.155 kb on - strand, within EX28DRAFT_0793at 795.238 kb on + strand, within EX28DRAFT_0793at 795.337 kb on + strand, within EX28DRAFT_0793at 795.337 kb on + strand, within EX28DRAFT_0793at 795.338 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.572 kb on - strandat 795.582 kb on - strandat 795.582 kb on - strandat 795.770 kb on - strand, within EX28DRAFT_0794at 795.773 kb on + strand, within EX28DRAFT_0794at 795.773 kb on + strand, within EX28DRAFT_0794at 795.938 kb on - strand, within EX28DRAFT_0794at 795.938 kb on - strand, within EX28DRAFT_0794

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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793,003 - +1.0
793,239 - +0.0
793,286 - -0.3
793,807 - EX28DRAFT_0791 0.79 +0.8
793,863 - EX28DRAFT_0791 0.87 -0.3
793,967 - +0.1
793,973 - +0.4
794,031 - -0.0
794,141 + EX28DRAFT_0792 0.17 +1.7
794,142 - EX28DRAFT_0792 0.17 +0.7
794,182 - EX28DRAFT_0792 0.21 -0.1
794,328 - EX28DRAFT_0792 0.35 +0.5
794,359 + EX28DRAFT_0792 0.39 +0.1
794,670 + EX28DRAFT_0792 0.69 -0.2
794,834 + EX28DRAFT_0792 0.85 -0.3
794,835 - EX28DRAFT_0792 0.85 +1.2
794,846 + EX28DRAFT_0792 0.86 +2.2
794,905 + -0.2
794,906 - +0.7
795,097 + +0.8
795,098 - +0.1
795,098 - -0.1
795,133 - EX28DRAFT_0793 0.14 -0.7
795,140 + EX28DRAFT_0793 0.15 -0.1
795,140 + EX28DRAFT_0793 0.15 -0.1
795,141 - EX28DRAFT_0793 0.16 +0.2
795,141 - EX28DRAFT_0793 0.16 -0.4
795,141 - EX28DRAFT_0793 0.16 -2.4
795,155 - EX28DRAFT_0793 0.18 -0.5
795,238 + EX28DRAFT_0793 0.34 +0.7
795,337 + EX28DRAFT_0793 0.53 -0.7
795,337 + EX28DRAFT_0793 0.53 +0.2
795,338 - EX28DRAFT_0793 0.53 +0.6
795,462 - EX28DRAFT_0793 0.77 -0.4
795,462 - EX28DRAFT_0793 0.77 -0.2
795,462 - EX28DRAFT_0793 0.77 -1.3
795,462 - EX28DRAFT_0793 0.77 +0.1
795,462 - EX28DRAFT_0793 0.77 -0.4
795,572 - +0.2
795,582 - -0.8
795,582 - +1.0
795,770 - EX28DRAFT_0794 0.12 +0.1
795,773 + EX28DRAFT_0794 0.12 +0.1
795,773 + EX28DRAFT_0794 0.12 +0.8
795,938 - EX28DRAFT_0794 0.23 +0.4
795,938 - EX28DRAFT_0794 0.23 -0.6

Or see this region's nucleotide sequence