Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0786 and EX28DRAFT_0787 are separated by 23 nucleotides EX28DRAFT_0787 and EX28DRAFT_0788 are separated by 28 nucleotides EX28DRAFT_0788 and EX28DRAFT_0789 are separated by 17 nucleotides
EX28DRAFT_0786: EX28DRAFT_0786 - hypothetical protein, at 785,950 to 786,444
_0786
EX28DRAFT_0787: EX28DRAFT_0787 - type VI secretion lipoprotein, VC_A0113 family, at 786,468 to 786,971
_0787
EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343
_0788
EX28DRAFT_0789: EX28DRAFT_0789 - type VI secretion system peptidoglycan-associated domain, at 788,361 to 789,599
_0789
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 786.036 kb on + strand, within EX28DRAFT_0786 at 786.036 kb on + strand, within EX28DRAFT_0786 at 786.139 kb on + strand, within EX28DRAFT_0786 at 786.140 kb on - strand, within EX28DRAFT_0786 at 786.211 kb on + strand, within EX28DRAFT_0786 at 786.211 kb on + strand, within EX28DRAFT_0786 at 786.284 kb on - strand, within EX28DRAFT_0786 at 786.337 kb on - strand, within EX28DRAFT_0786 at 786.345 kb on + strand, within EX28DRAFT_0786 at 786.346 kb on - strand, within EX28DRAFT_0786 at 786.442 kb on + strand at 786.442 kb on + strand at 786.507 kb on + strand at 786.620 kb on + strand, within EX28DRAFT_0787 at 786.621 kb on - strand, within EX28DRAFT_0787 at 786.675 kb on + strand, within EX28DRAFT_0787 at 786.676 kb on - strand, within EX28DRAFT_0787 at 786.676 kb on - strand, within EX28DRAFT_0787 at 786.799 kb on - strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.885 kb on - strand, within EX28DRAFT_0787 at 786.885 kb on - strand, within EX28DRAFT_0787 at 786.888 kb on + strand, within EX28DRAFT_0787 at 786.889 kb on - strand, within EX28DRAFT_0787 at 787.075 kb on + strand at 787.076 kb on - strand at 787.110 kb on - strand at 787.120 kb on + strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.189 kb on + strand, within EX28DRAFT_0788 at 787.189 kb on + strand, within EX28DRAFT_0788 at 787.190 kb on - strand, within EX28DRAFT_0788 at 787.190 kb on - strand, within EX28DRAFT_0788 at 787.525 kb on - strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.695 kb on + strand, within EX28DRAFT_0788 at 787.752 kb on - strand, within EX28DRAFT_0788 at 787.864 kb on + strand, within EX28DRAFT_0788 at 788.155 kb on - strand, within EX28DRAFT_0788 at 788.213 kb on - strand at 788.257 kb on - strand at 788.342 kb on - strand at 788.344 kb on + strand at 788.345 kb on - strand at 788.345 kb on - strand at 788.357 kb on + strand at 788.360 kb on + strand at 788.360 kb on + strand at 788.360 kb on + strand at 788.361 kb on - strand at 788.503 kb on + strand, within EX28DRAFT_0789 at 788.756 kb on + strand, within EX28DRAFT_0789 at 788.781 kb on + strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 789.012 kb on + strand, within EX28DRAFT_0789 at 789.024 kb on - strand, within EX28DRAFT_0789 at 789.070 kb on - strand, within EX28DRAFT_0789 at 789.070 kb on - strand, within EX28DRAFT_0789
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 786,036 + EX28DRAFT_0786 0.17 +0.8 786,036 + EX28DRAFT_0786 0.17 +0.4 786,139 + EX28DRAFT_0786 0.38 +0.3 786,140 - EX28DRAFT_0786 0.38 -0.1 786,211 + EX28DRAFT_0786 0.53 -0.7 786,211 + EX28DRAFT_0786 0.53 -0.1 786,284 - EX28DRAFT_0786 0.67 -0.8 786,337 - EX28DRAFT_0786 0.78 -0.2 786,345 + EX28DRAFT_0786 0.80 -0.5 786,346 - EX28DRAFT_0786 0.80 -0.1 786,442 + -0.5 786,442 + +0.2 786,507 + -0.7 786,620 + EX28DRAFT_0787 0.30 -0.6 786,621 - EX28DRAFT_0787 0.30 -0.3 786,675 + EX28DRAFT_0787 0.41 +0.8 786,676 - EX28DRAFT_0787 0.41 -0.1 786,676 - EX28DRAFT_0787 0.41 -0.9 786,799 - EX28DRAFT_0787 0.66 -0.4 786,884 + EX28DRAFT_0787 0.83 -0.7 786,884 + EX28DRAFT_0787 0.83 -0.1 786,884 + EX28DRAFT_0787 0.83 -1.4 786,885 - EX28DRAFT_0787 0.83 +0.1 786,885 - EX28DRAFT_0787 0.83 +0.8 786,888 + EX28DRAFT_0787 0.83 +0.4 786,889 - EX28DRAFT_0787 0.84 -0.4 787,075 + -3.0 787,076 - +0.6 787,110 - +0.9 787,120 + +0.0 787,121 - -0.8 787,121 - -0.5 787,121 - -0.3 787,121 - -0.4 787,189 + EX28DRAFT_0788 0.14 -0.2 787,189 + EX28DRAFT_0788 0.14 +1.1 787,190 - EX28DRAFT_0788 0.14 -0.2 787,190 - EX28DRAFT_0788 0.14 +0.3 787,525 - EX28DRAFT_0788 0.39 +0.3 787,555 + EX28DRAFT_0788 0.41 +0.6 787,555 + EX28DRAFT_0788 0.41 +0.1 787,556 - EX28DRAFT_0788 0.41 +1.2 787,556 - EX28DRAFT_0788 0.41 +1.0 787,556 - EX28DRAFT_0788 0.41 +0.1 787,695 + EX28DRAFT_0788 0.52 +2.9 787,752 - EX28DRAFT_0788 0.56 -0.7 787,864 + EX28DRAFT_0788 0.64 +0.2 788,155 - EX28DRAFT_0788 0.86 -0.0 788,213 - -3.6 788,257 - +0.6 788,342 - +0.2 788,344 + +1.1 788,345 - -0.3 788,345 - -0.2 788,357 + +0.5 788,360 + -2.2 788,360 + -1.2 788,360 + +0.5 788,361 - +2.1 788,503 + EX28DRAFT_0789 0.11 +0.1 788,756 + EX28DRAFT_0789 0.32 +0.2 788,781 + EX28DRAFT_0789 0.34 +1.5 788,782 - EX28DRAFT_0789 0.34 +1.4 788,782 - EX28DRAFT_0789 0.34 -0.5 788,782 - EX28DRAFT_0789 0.34 +1.0 788,782 - EX28DRAFT_0789 0.34 -0.2 789,012 + EX28DRAFT_0789 0.53 -0.1 789,024 - EX28DRAFT_0789 0.54 -1.4 789,070 - EX28DRAFT_0789 0.57 +1.1 789,070 - EX28DRAFT_0789 0.57 -0.2
Or see this region's nucleotide sequence