Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0776 and EX28DRAFT_0777 are separated by 48 nucleotides EX28DRAFT_0777 and EX28DRAFT_0778 are separated by 0 nucleotides EX28DRAFT_0778 and EX28DRAFT_0779 overlap by 1 nucleotides EX28DRAFT_0779 and EX28DRAFT_0780 are separated by 281 nucleotides
EX28DRAFT_0776: EX28DRAFT_0776 - Arabinose efflux permease, at 774,898 to 776,085
_0776
EX28DRAFT_0777: EX28DRAFT_0777 - type VI secretion system effector, Hcp1 family, at 776,134 to 776,613
_0777
EX28DRAFT_0778: EX28DRAFT_0778 - hypothetical protein, at 776,614 to 776,835
_0778
EX28DRAFT_0779: EX28DRAFT_0779 - hypothetical protein, at 776,835 to 777,539
_0779
EX28DRAFT_0780: EX28DRAFT_0780 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 777,821 to 778,831
_0780
Position (kb) 776
777
778 Strain fitness (log2 ratio) -2
-1
0
1 at 776.116 kb on + strand at 776.116 kb on + strand at 776.264 kb on - strand, within EX28DRAFT_0777 at 776.596 kb on - strand at 776.616 kb on - strand at 776.662 kb on + strand, within EX28DRAFT_0778 at 776.850 kb on - strand at 776.890 kb on - strand at 776.894 kb on + strand at 776.936 kb on - strand, within EX28DRAFT_0779 at 777.055 kb on - strand, within EX28DRAFT_0779 at 777.133 kb on + strand, within EX28DRAFT_0779 at 777.184 kb on + strand, within EX28DRAFT_0779 at 777.205 kb on - strand, within EX28DRAFT_0779 at 777.303 kb on - strand, within EX28DRAFT_0779 at 777.753 kb on + strand at 777.772 kb on - strand at 777.822 kb on + strand at 777.823 kb on - strand at 778.015 kb on + strand, within EX28DRAFT_0780 at 778.057 kb on + strand, within EX28DRAFT_0780 at 778.290 kb on + strand, within EX28DRAFT_0780 at 778.290 kb on + strand, within EX28DRAFT_0780 at 778.291 kb on - strand, within EX28DRAFT_0780 at 778.416 kb on + strand, within EX28DRAFT_0780 at 778.416 kb on + strand, within EX28DRAFT_0780 at 778.507 kb on + strand, within EX28DRAFT_0780 at 778.507 kb on + strand, within EX28DRAFT_0780 at 778.508 kb on - strand, within EX28DRAFT_0780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 776,116 + -0.4 776,116 + -0.9 776,264 - EX28DRAFT_0777 0.27 +0.9 776,596 - -1.1 776,616 - -0.9 776,662 + EX28DRAFT_0778 0.22 -2.1 776,850 - +0.2 776,890 - -0.5 776,894 + -0.3 776,936 - EX28DRAFT_0779 0.14 -1.1 777,055 - EX28DRAFT_0779 0.31 +0.9 777,133 + EX28DRAFT_0779 0.42 -1.3 777,184 + EX28DRAFT_0779 0.50 -0.5 777,205 - EX28DRAFT_0779 0.52 -2.2 777,303 - EX28DRAFT_0779 0.66 -1.2 777,753 + +0.8 777,772 - -0.0 777,822 + -0.7 777,823 - +0.8 778,015 + EX28DRAFT_0780 0.19 +0.9 778,057 + EX28DRAFT_0780 0.23 +0.2 778,290 + EX28DRAFT_0780 0.46 -0.2 778,290 + EX28DRAFT_0780 0.46 -0.4 778,291 - EX28DRAFT_0780 0.46 -0.1 778,416 + EX28DRAFT_0780 0.59 -0.7 778,416 + EX28DRAFT_0780 0.59 -0.4 778,507 + EX28DRAFT_0780 0.68 -0.1 778,507 + EX28DRAFT_0780 0.68 -1.5 778,508 - EX28DRAFT_0780 0.68 -1.0
Or see this region's nucleotide sequence