Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0604

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0603 and EX28DRAFT_0604 are separated by 294 nucleotidesEX28DRAFT_0604 and EX28DRAFT_0605 are separated by 7 nucleotidesEX28DRAFT_0605 and EX28DRAFT_0606 are separated by 9 nucleotides EX28DRAFT_0603: EX28DRAFT_0603 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 603,898 to 604,521 _0603 EX28DRAFT_0604: EX28DRAFT_0604 - flagellar biosynthetic protein FliR, at 604,816 to 605,601 _0604 EX28DRAFT_0605: EX28DRAFT_0605 - flagellar biosynthetic protein FliQ, at 605,609 to 605,878 _0605 EX28DRAFT_0606: EX28DRAFT_0606 - flagellar biosynthetic protein FliP, at 605,888 to 606,625 _0606 Position (kb) 604 605 606Strain fitness (log2 ratio) -1 0 1 2at 603.876 kb on - strandat 603.891 kb on + strandat 603.970 kb on - strand, within EX28DRAFT_0603at 603.970 kb on - strand, within EX28DRAFT_0603at 603.993 kb on + strand, within EX28DRAFT_0603at 603.996 kb on + strand, within EX28DRAFT_0603at 604.032 kb on + strand, within EX28DRAFT_0603at 604.033 kb on - strand, within EX28DRAFT_0603at 604.114 kb on + strand, within EX28DRAFT_0603at 604.156 kb on - strand, within EX28DRAFT_0603at 604.206 kb on + strand, within EX28DRAFT_0603at 604.305 kb on + strand, within EX28DRAFT_0603at 604.365 kb on + strand, within EX28DRAFT_0603at 604.365 kb on + strand, within EX28DRAFT_0603at 604.384 kb on + strand, within EX28DRAFT_0603at 604.447 kb on + strand, within EX28DRAFT_0603at 604.490 kb on + strandat 604.498 kb on + strandat 604.498 kb on + strandat 604.527 kb on - strandat 604.549 kb on + strandat 604.604 kb on + strandat 604.605 kb on - strandat 604.742 kb on + strandat 604.742 kb on + strandat 604.743 kb on - strandat 604.817 kb on + strandat 604.818 kb on - strandat 604.873 kb on + strandat 604.897 kb on - strand, within EX28DRAFT_0604at 604.918 kb on + strand, within EX28DRAFT_0604at 604.921 kb on + strand, within EX28DRAFT_0604at 604.994 kb on - strand, within EX28DRAFT_0604at 604.999 kb on + strand, within EX28DRAFT_0604at 605.086 kb on - strand, within EX28DRAFT_0604at 605.163 kb on + strand, within EX28DRAFT_0604at 605.163 kb on + strand, within EX28DRAFT_0604at 605.217 kb on + strand, within EX28DRAFT_0604at 605.220 kb on + strand, within EX28DRAFT_0604at 605.416 kb on - strand, within EX28DRAFT_0604at 605.521 kb on + strand, within EX28DRAFT_0604at 605.521 kb on + strand, within EX28DRAFT_0604at 605.522 kb on - strand, within EX28DRAFT_0604at 605.622 kb on + strandat 605.622 kb on + strandat 605.635 kb on + strandat 605.650 kb on + strand, within EX28DRAFT_0605at 605.650 kb on + strand, within EX28DRAFT_0605at 605.651 kb on - strand, within EX28DRAFT_0605at 605.651 kb on - strand, within EX28DRAFT_0605at 605.651 kb on - strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.653 kb on - strand, within EX28DRAFT_0605at 605.653 kb on - strand, within EX28DRAFT_0605at 605.653 kb on - strand, within EX28DRAFT_0605at 605.770 kb on + strand, within EX28DRAFT_0605at 605.770 kb on + strand, within EX28DRAFT_0605at 605.889 kb on + strandat 605.889 kb on + strandat 605.890 kb on - strandat 605.946 kb on - strandat 605.962 kb on + strand, within EX28DRAFT_0606at 605.963 kb on - strand, within EX28DRAFT_0606at 605.963 kb on - strand, within EX28DRAFT_0606at 606.105 kb on + strand, within EX28DRAFT_0606at 606.106 kb on - strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.215 kb on - strand, within EX28DRAFT_0606at 606.300 kb on + strand, within EX28DRAFT_0606at 606.300 kb on + strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.481 kb on + strand, within EX28DRAFT_0606at 606.567 kb on + strandat 606.567 kb on + strandat 606.568 kb on - strandat 606.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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603,876 - -0.2
603,891 + +1.2
603,970 - EX28DRAFT_0603 0.12 +0.3
603,970 - EX28DRAFT_0603 0.12 +0.7
603,993 + EX28DRAFT_0603 0.15 -0.6
603,996 + EX28DRAFT_0603 0.16 +0.2
604,032 + EX28DRAFT_0603 0.21 -0.1
604,033 - EX28DRAFT_0603 0.22 +1.6
604,114 + EX28DRAFT_0603 0.35 -0.4
604,156 - EX28DRAFT_0603 0.41 -0.4
604,206 + EX28DRAFT_0603 0.49 +0.4
604,305 + EX28DRAFT_0603 0.65 -0.9
604,365 + EX28DRAFT_0603 0.75 -0.5
604,365 + EX28DRAFT_0603 0.75 +1.1
604,384 + EX28DRAFT_0603 0.78 -1.1
604,447 + EX28DRAFT_0603 0.88 -0.2
604,490 + -0.3
604,498 + -0.3
604,498 + +0.8
604,527 - -0.5
604,549 + -0.9
604,604 + -0.6
604,605 - -0.2
604,742 + -1.2
604,742 + +0.0
604,743 - -0.1
604,817 + +0.6
604,818 - +0.5
604,873 + +1.3
604,897 - EX28DRAFT_0604 0.10 -1.3
604,918 + EX28DRAFT_0604 0.13 +1.1
604,921 + EX28DRAFT_0604 0.13 -0.1
604,994 - EX28DRAFT_0604 0.23 -0.2
604,999 + EX28DRAFT_0604 0.23 +1.0
605,086 - EX28DRAFT_0604 0.34 +0.1
605,163 + EX28DRAFT_0604 0.44 +1.2
605,163 + EX28DRAFT_0604 0.44 +0.8
605,217 + EX28DRAFT_0604 0.51 +1.3
605,220 + EX28DRAFT_0604 0.51 +1.3
605,416 - EX28DRAFT_0604 0.76 +1.5
605,521 + EX28DRAFT_0604 0.90 +2.7
605,521 + EX28DRAFT_0604 0.90 -0.8
605,522 - EX28DRAFT_0604 0.90 +0.4
605,622 + +0.7
605,622 + +0.8
605,635 + +1.2
605,650 + EX28DRAFT_0605 0.15 +0.7
605,650 + EX28DRAFT_0605 0.15 +0.6
605,651 - EX28DRAFT_0605 0.16 +0.3
605,651 - EX28DRAFT_0605 0.16 +0.5
605,651 - EX28DRAFT_0605 0.16 +1.0
605,652 + EX28DRAFT_0605 0.16 +1.1
605,652 + EX28DRAFT_0605 0.16 +0.5
605,652 + EX28DRAFT_0605 0.16 -0.3
605,652 + EX28DRAFT_0605 0.16 +0.1
605,653 - EX28DRAFT_0605 0.16 +1.3
605,653 - EX28DRAFT_0605 0.16 +1.5
605,653 - EX28DRAFT_0605 0.16 +1.3
605,770 + EX28DRAFT_0605 0.60 +0.3
605,770 + EX28DRAFT_0605 0.60 +0.5
605,889 + +2.7
605,889 + +0.7
605,890 - +0.3
605,946 - +2.1
605,962 + EX28DRAFT_0606 0.10 +0.5
605,963 - EX28DRAFT_0606 0.10 +0.7
605,963 - EX28DRAFT_0606 0.10 +0.7
606,105 + EX28DRAFT_0606 0.29 -0.4
606,106 - EX28DRAFT_0606 0.30 -0.6
606,214 + EX28DRAFT_0606 0.44 +1.0
606,214 + EX28DRAFT_0606 0.44 +0.5
606,214 + EX28DRAFT_0606 0.44 +1.1
606,214 + EX28DRAFT_0606 0.44 +1.4
606,215 - EX28DRAFT_0606 0.44 +0.1
606,300 + EX28DRAFT_0606 0.56 +0.8
606,300 + EX28DRAFT_0606 0.56 +0.2
606,467 - EX28DRAFT_0606 0.78 +2.7
606,467 - EX28DRAFT_0606 0.78 +0.7
606,467 - EX28DRAFT_0606 0.78 +1.5
606,481 + EX28DRAFT_0606 0.80 +0.6
606,567 + +1.0
606,567 + +0.8
606,568 - +0.6
606,568 - +1.7

Or see this region's nucleotide sequence