Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0563 and EX28DRAFT_0564 are separated by 59 nucleotides EX28DRAFT_0564 and EX28DRAFT_0565 are separated by 320 nucleotides EX28DRAFT_0565 and EX28DRAFT_0566 are separated by 96 nucleotides
EX28DRAFT_0563: EX28DRAFT_0563 - Uncharacterized protein conserved in bacteria, at 560,717 to 561,613
_0563
EX28DRAFT_0564: EX28DRAFT_0564 - tRNA, at 561,673 to 561,748
_0564
EX28DRAFT_0565: EX28DRAFT_0565 - Transcriptional regulator, at 562,069 to 562,986
_0565
EX28DRAFT_0566: EX28DRAFT_0566 - Transcriptional regulator, at 563,083 to 564,033
_0566
Position (kb) 562
563 Strain fitness (log2 ratio) -1
0
1
2 at 561.137 kb on - strand, within EX28DRAFT_0563 at 561.251 kb on + strand, within EX28DRAFT_0563 at 561.261 kb on - strand, within EX28DRAFT_0563 at 561.261 kb on - strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.276 kb on - strand, within EX28DRAFT_0563 at 561.292 kb on + strand, within EX28DRAFT_0563 at 561.362 kb on + strand, within EX28DRAFT_0563 at 561.506 kb on - strand, within EX28DRAFT_0563 at 561.506 kb on - strand, within EX28DRAFT_0563 at 561.629 kb on - strand at 561.768 kb on + strand at 561.924 kb on + strand at 561.925 kb on - strand at 561.925 kb on - strand at 561.939 kb on + strand at 561.940 kb on - strand at 561.943 kb on + strand at 561.943 kb on + strand at 561.944 kb on - strand at 562.076 kb on + strand at 562.090 kb on + strand at 562.091 kb on - strand at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.262 kb on - strand, within EX28DRAFT_0565 at 562.264 kb on - strand, within EX28DRAFT_0565 at 562.383 kb on + strand, within EX28DRAFT_0565 at 562.438 kb on + strand, within EX28DRAFT_0565 at 562.439 kb on - strand, within EX28DRAFT_0565 at 562.604 kb on + strand, within EX28DRAFT_0565 at 562.636 kb on + strand, within EX28DRAFT_0565 at 562.652 kb on - strand, within EX28DRAFT_0565 at 562.652 kb on - strand, within EX28DRAFT_0565 at 562.875 kb on + strand, within EX28DRAFT_0565 at 562.875 kb on + strand, within EX28DRAFT_0565 at 563.002 kb on + strand at 563.047 kb on - strand at 563.058 kb on + strand at 563.058 kb on + strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.101 kb on - strand at 563.131 kb on + strand at 563.155 kb on - strand at 563.161 kb on + strand at 563.161 kb on + strand at 563.162 kb on - strand at 563.162 kb on - strand at 563.163 kb on + strand at 563.164 kb on - strand at 563.164 kb on - strand at 563.283 kb on - strand, within EX28DRAFT_0566 at 563.419 kb on - strand, within EX28DRAFT_0566 at 563.592 kb on - strand, within EX28DRAFT_0566 at 563.592 kb on - strand, within EX28DRAFT_0566 at 563.592 kb on - strand, within EX28DRAFT_0566 at 563.779 kb on + strand, within EX28DRAFT_0566 at 563.929 kb on + strand, within EX28DRAFT_0566 at 563.929 kb on + strand, within EX28DRAFT_0566 at 563.930 kb on - strand, within EX28DRAFT_0566
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 561,137 - EX28DRAFT_0563 0.47 +0.2 561,251 + EX28DRAFT_0563 0.60 -0.9 561,261 - EX28DRAFT_0563 0.61 -0.3 561,261 - EX28DRAFT_0563 0.61 -0.7 561,275 + EX28DRAFT_0563 0.62 +0.8 561,275 + EX28DRAFT_0563 0.62 -1.3 561,275 + EX28DRAFT_0563 0.62 +0.2 561,276 - EX28DRAFT_0563 0.62 +0.2 561,292 + EX28DRAFT_0563 0.64 +0.3 561,362 + EX28DRAFT_0563 0.72 +0.9 561,506 - EX28DRAFT_0563 0.88 +1.3 561,506 - EX28DRAFT_0563 0.88 +0.2 561,629 - +0.2 561,768 + -0.3 561,924 + -0.2 561,925 - +0.5 561,925 - +0.2 561,939 + -0.1 561,940 - -0.3 561,943 + +0.4 561,943 + +0.1 561,944 - +0.4 562,076 + +1.4 562,090 + +0.5 562,091 - -0.5 562,261 + EX28DRAFT_0565 0.21 -0.1 562,261 + EX28DRAFT_0565 0.21 -0.2 562,262 - EX28DRAFT_0565 0.21 +0.5 562,264 - EX28DRAFT_0565 0.21 +2.3 562,383 + EX28DRAFT_0565 0.34 -0.5 562,438 + EX28DRAFT_0565 0.40 +1.3 562,439 - EX28DRAFT_0565 0.40 +0.7 562,604 + EX28DRAFT_0565 0.58 -0.6 562,636 + EX28DRAFT_0565 0.62 +0.4 562,652 - EX28DRAFT_0565 0.64 +0.7 562,652 - EX28DRAFT_0565 0.64 +0.3 562,875 + EX28DRAFT_0565 0.88 +1.0 562,875 + EX28DRAFT_0565 0.88 -0.2 563,002 + +0.5 563,047 - -0.3 563,058 + -0.3 563,058 + +0.3 563,059 - -0.3 563,059 - -0.8 563,059 - +0.6 563,059 - +0.1 563,059 - +2.3 563,101 - -0.2 563,131 + -0.3 563,155 - -0.4 563,161 + +1.8 563,161 + -0.2 563,162 - +0.2 563,162 - -0.9 563,163 + +0.1 563,164 - -0.9 563,164 - -0.2 563,283 - EX28DRAFT_0566 0.21 +0.2 563,419 - EX28DRAFT_0566 0.35 -0.1 563,592 - EX28DRAFT_0566 0.54 -0.3 563,592 - EX28DRAFT_0566 0.54 -0.1 563,592 - EX28DRAFT_0566 0.54 +1.0 563,779 + EX28DRAFT_0566 0.73 -0.6 563,929 + EX28DRAFT_0566 0.89 +0.4 563,929 + EX28DRAFT_0566 0.89 -0.4 563,930 - EX28DRAFT_0566 0.89 +1.9
Or see this region's nucleotide sequence