Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0515 and EX28DRAFT_0516 are separated by 53 nucleotides EX28DRAFT_0516 and EX28DRAFT_0517 overlap by 1 nucleotides EX28DRAFT_0517 and EX28DRAFT_0518 are separated by 0 nucleotides EX28DRAFT_0518 and EX28DRAFT_0519 are separated by 38 nucleotides
EX28DRAFT_0515: EX28DRAFT_0515 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 508,489 to 509,571
_0515
EX28DRAFT_0516: EX28DRAFT_0516 - Nucleoside-diphosphate-sugar epimerases, at 509,625 to 510,569
_0516
EX28DRAFT_0517: EX28DRAFT_0517 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 510,569 to 511,603
_0517
EX28DRAFT_0518: EX28DRAFT_0518 - Bacterial transferase hexapeptide (six repeats), at 511,604 to 512,164
_0518
EX28DRAFT_0519: EX28DRAFT_0519 - Predicted nucleoside-diphosphate sugar epimerases, at 512,203 to 514,089
_0519
Position (kb) 510
511
512 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 509.586 kb on + strand at 509.599 kb on - strand at 509.704 kb on + strand at 509.762 kb on + strand, within EX28DRAFT_0516 at 509.807 kb on + strand, within EX28DRAFT_0516 at 509.838 kb on - strand, within EX28DRAFT_0516 at 509.962 kb on + strand, within EX28DRAFT_0516 at 509.963 kb on - strand, within EX28DRAFT_0516 at 510.033 kb on + strand, within EX28DRAFT_0516 at 510.038 kb on + strand, within EX28DRAFT_0516 at 510.039 kb on - strand, within EX28DRAFT_0516 at 510.039 kb on - strand, within EX28DRAFT_0516 at 510.106 kb on + strand, within EX28DRAFT_0516 at 510.381 kb on + strand, within EX28DRAFT_0516 at 510.993 kb on - strand, within EX28DRAFT_0517 at 511.034 kb on - strand, within EX28DRAFT_0517 at 511.093 kb on - strand, within EX28DRAFT_0517 at 511.093 kb on - strand, within EX28DRAFT_0517 at 511.334 kb on - strand, within EX28DRAFT_0517 at 511.337 kb on - strand, within EX28DRAFT_0517 at 511.771 kb on + strand, within EX28DRAFT_0518 at 511.771 kb on + strand, within EX28DRAFT_0518 at 511.772 kb on - strand, within EX28DRAFT_0518 at 511.807 kb on + strand, within EX28DRAFT_0518 at 511.945 kb on - strand, within EX28DRAFT_0518 at 511.972 kb on + strand, within EX28DRAFT_0518 at 511.977 kb on + strand, within EX28DRAFT_0518 at 511.981 kb on + strand, within EX28DRAFT_0518 at 511.982 kb on - strand, within EX28DRAFT_0518 at 511.993 kb on + strand, within EX28DRAFT_0518 at 512.035 kb on - strand, within EX28DRAFT_0518 at 512.162 kb on + strand at 512.249 kb on + strand at 512.268 kb on - strand at 512.268 kb on - strand at 512.420 kb on + strand, within EX28DRAFT_0519 at 512.425 kb on + strand, within EX28DRAFT_0519 at 512.429 kb on + strand, within EX28DRAFT_0519 at 512.450 kb on + strand, within EX28DRAFT_0519 at 512.558 kb on + strand, within EX28DRAFT_0519 at 512.558 kb on + strand, within EX28DRAFT_0519 at 512.559 kb on - strand, within EX28DRAFT_0519
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 509,586 + +0.2 509,599 - -3.5 509,704 + -2.0 509,762 + EX28DRAFT_0516 0.14 +0.3 509,807 + EX28DRAFT_0516 0.19 -1.0 509,838 - EX28DRAFT_0516 0.23 -0.2 509,962 + EX28DRAFT_0516 0.36 -0.5 509,963 - EX28DRAFT_0516 0.36 -2.2 510,033 + EX28DRAFT_0516 0.43 +0.7 510,038 + EX28DRAFT_0516 0.44 -0.4 510,039 - EX28DRAFT_0516 0.44 -1.0 510,039 - EX28DRAFT_0516 0.44 -0.2 510,106 + EX28DRAFT_0516 0.51 +0.9 510,381 + EX28DRAFT_0516 0.80 +0.0 510,993 - EX28DRAFT_0517 0.41 -3.2 511,034 - EX28DRAFT_0517 0.45 -1.4 511,093 - EX28DRAFT_0517 0.51 -1.4 511,093 - EX28DRAFT_0517 0.51 -2.0 511,334 - EX28DRAFT_0517 0.74 -0.9 511,337 - EX28DRAFT_0517 0.74 -3.9 511,771 + EX28DRAFT_0518 0.30 +0.1 511,771 + EX28DRAFT_0518 0.30 -0.5 511,772 - EX28DRAFT_0518 0.30 -4.1 511,807 + EX28DRAFT_0518 0.36 -0.4 511,945 - EX28DRAFT_0518 0.61 -5.3 511,972 + EX28DRAFT_0518 0.66 -0.1 511,977 + EX28DRAFT_0518 0.66 -0.9 511,981 + EX28DRAFT_0518 0.67 +0.8 511,982 - EX28DRAFT_0518 0.67 -0.4 511,993 + EX28DRAFT_0518 0.69 +0.2 512,035 - EX28DRAFT_0518 0.77 -0.3 512,162 + +1.0 512,249 + -2.2 512,268 - -1.6 512,268 - -3.0 512,420 + EX28DRAFT_0519 0.11 -0.3 512,425 + EX28DRAFT_0519 0.12 -0.8 512,429 + EX28DRAFT_0519 0.12 -1.0 512,450 + EX28DRAFT_0519 0.13 -0.9 512,558 + EX28DRAFT_0519 0.19 -0.9 512,558 + EX28DRAFT_0519 0.19 -1.3 512,559 - EX28DRAFT_0519 0.19 -1.4
Or see this region's nucleotide sequence