Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0506

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0505 and EX28DRAFT_0506 are separated by 3 nucleotidesEX28DRAFT_0506 and EX28DRAFT_0507 are separated by 111 nucleotides EX28DRAFT_0505: EX28DRAFT_0505 - colanic acid biosynthesis glycosyl transferase WcaI, at 496,034 to 497,257 _0505 EX28DRAFT_0506: EX28DRAFT_0506 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 497,261 to 498,697 _0506 EX28DRAFT_0507: EX28DRAFT_0507 - Phosphomannomutase, at 498,809 to 500,179 _0507 Position (kb) 497 498 499Strain fitness (log2 ratio) -1 0 1 2at 496.441 kb on + strand, within EX28DRAFT_0505at 496.441 kb on + strand, within EX28DRAFT_0505at 496.452 kb on - strand, within EX28DRAFT_0505at 496.560 kb on - strand, within EX28DRAFT_0505at 496.917 kb on - strand, within EX28DRAFT_0505at 497.067 kb on + strand, within EX28DRAFT_0505at 497.192 kb on + strandat 497.192 kb on + strandat 497.236 kb on + strandat 497.237 kb on - strandat 497.237 kb on - strandat 497.245 kb on + strandat 497.246 kb on - strandat 497.247 kb on + strandat 497.247 kb on + strandat 497.247 kb on + strandat 497.247 kb on + strandat 497.248 kb on - strandat 497.458 kb on + strand, within EX28DRAFT_0506at 497.458 kb on + strand, within EX28DRAFT_0506at 497.738 kb on + strand, within EX28DRAFT_0506at 497.837 kb on + strand, within EX28DRAFT_0506at 497.837 kb on + strand, within EX28DRAFT_0506at 497.838 kb on - strand, within EX28DRAFT_0506at 497.855 kb on + strand, within EX28DRAFT_0506at 497.855 kb on + strand, within EX28DRAFT_0506at 497.855 kb on + strand, within EX28DRAFT_0506at 497.856 kb on - strand, within EX28DRAFT_0506at 497.856 kb on - strand, within EX28DRAFT_0506at 497.856 kb on - strand, within EX28DRAFT_0506at 497.859 kb on - strand, within EX28DRAFT_0506at 497.859 kb on - strand, within EX28DRAFT_0506at 497.859 kb on - strand, within EX28DRAFT_0506at 498.053 kb on - strand, within EX28DRAFT_0506at 498.195 kb on - strand, within EX28DRAFT_0506at 498.353 kb on - strand, within EX28DRAFT_0506at 498.368 kb on + strand, within EX28DRAFT_0506at 498.386 kb on + strand, within EX28DRAFT_0506at 498.386 kb on + strand, within EX28DRAFT_0506at 498.387 kb on - strand, within EX28DRAFT_0506at 498.387 kb on - strand, within EX28DRAFT_0506at 498.387 kb on - strand, within EX28DRAFT_0506at 498.512 kb on - strand, within EX28DRAFT_0506at 498.563 kb on + strandat 498.563 kb on + strandat 498.563 kb on + strandat 498.563 kb on + strandat 498.564 kb on - strandat 498.564 kb on - strandat 498.564 kb on - strandat 498.564 kb on - strandat 498.695 kb on + strandat 498.696 kb on - strandat 498.708 kb on + strandat 498.836 kb on + strandat 498.836 kb on + strandat 498.841 kb on + strandat 498.842 kb on - strandat 499.119 kb on - strand, within EX28DRAFT_0507at 499.119 kb on - strand, within EX28DRAFT_0507at 499.292 kb on + strand, within EX28DRAFT_0507at 499.334 kb on - strand, within EX28DRAFT_0507at 499.387 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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496,441 + EX28DRAFT_0505 0.33 -1.0
496,441 + EX28DRAFT_0505 0.33 -1.0
496,452 - EX28DRAFT_0505 0.34 -1.6
496,560 - EX28DRAFT_0505 0.43 -0.1
496,917 - EX28DRAFT_0505 0.72 +1.4
497,067 + EX28DRAFT_0505 0.84 +0.2
497,192 + +0.1
497,192 + -0.1
497,236 + -0.7
497,237 - -0.0
497,237 - -0.5
497,245 + +0.1
497,246 - +0.6
497,247 + +0.3
497,247 + -0.7
497,247 + +0.5
497,247 + +0.6
497,248 - +2.2
497,458 + EX28DRAFT_0506 0.14 -0.3
497,458 + EX28DRAFT_0506 0.14 +1.0
497,738 + EX28DRAFT_0506 0.33 +1.1
497,837 + EX28DRAFT_0506 0.40 -1.0
497,837 + EX28DRAFT_0506 0.40 -0.0
497,838 - EX28DRAFT_0506 0.40 +0.1
497,855 + EX28DRAFT_0506 0.41 -0.2
497,855 + EX28DRAFT_0506 0.41 -0.5
497,855 + EX28DRAFT_0506 0.41 +0.1
497,856 - EX28DRAFT_0506 0.41 -0.5
497,856 - EX28DRAFT_0506 0.41 -0.5
497,856 - EX28DRAFT_0506 0.41 -0.3
497,859 - EX28DRAFT_0506 0.42 -0.6
497,859 - EX28DRAFT_0506 0.42 -0.4
497,859 - EX28DRAFT_0506 0.42 +0.0
498,053 - EX28DRAFT_0506 0.55 -0.8
498,195 - EX28DRAFT_0506 0.65 -0.5
498,353 - EX28DRAFT_0506 0.76 +0.4
498,368 + EX28DRAFT_0506 0.77 -0.6
498,386 + EX28DRAFT_0506 0.78 +0.4
498,386 + EX28DRAFT_0506 0.78 -0.3
498,387 - EX28DRAFT_0506 0.78 +0.3
498,387 - EX28DRAFT_0506 0.78 -0.1
498,387 - EX28DRAFT_0506 0.78 -0.9
498,512 - EX28DRAFT_0506 0.87 -0.2
498,563 + +0.2
498,563 + -0.1
498,563 + -0.3
498,563 + -0.1
498,564 - +0.0
498,564 - +0.0
498,564 - -0.7
498,564 - -1.0
498,695 + +0.3
498,696 - +0.1
498,708 + +1.6
498,836 + +0.5
498,836 + -1.3
498,841 + +0.1
498,842 - +0.0
499,119 - EX28DRAFT_0507 0.23 +0.9
499,119 - EX28DRAFT_0507 0.23 -0.5
499,292 + EX28DRAFT_0507 0.35 -0.7
499,334 - EX28DRAFT_0507 0.38 -0.7
499,387 + EX28DRAFT_0507 0.42 +0.3
499,601 + EX28DRAFT_0507 0.58 +0.9
499,601 + EX28DRAFT_0507 0.58 -0.5
499,601 + EX28DRAFT_0507 0.58 +0.4
499,601 + EX28DRAFT_0507 0.58 -0.9
499,601 + EX28DRAFT_0507 0.58 +0.3
499,601 + EX28DRAFT_0507 0.58 -1.0
499,602 - EX28DRAFT_0507 0.58 +0.3
499,602 - EX28DRAFT_0507 0.58 -0.0
499,602 - EX28DRAFT_0507 0.58 +0.3

Or see this region's nucleotide sequence