Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0427

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0426 and EX28DRAFT_0427 are separated by 94 nucleotidesEX28DRAFT_0427 and EX28DRAFT_0428 are separated by 112 nucleotides EX28DRAFT_0426: EX28DRAFT_0426 - D-alanyl-D-alanine carboxypeptidase, at 405,423 to 406,346 _0426 EX28DRAFT_0427: EX28DRAFT_0427 - Sortase and related acyltransferases, at 406,441 to 406,995 _0427 EX28DRAFT_0428: EX28DRAFT_0428 - FAD/FMN-containing dehydrogenases, at 407,108 to 408,856 _0428 Position (kb) 406 407Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 405.450 kb on - strandat 405.578 kb on + strand, within EX28DRAFT_0426at 405.588 kb on + strand, within EX28DRAFT_0426at 405.589 kb on - strand, within EX28DRAFT_0426at 405.637 kb on + strand, within EX28DRAFT_0426at 405.730 kb on - strand, within EX28DRAFT_0426at 405.906 kb on + strand, within EX28DRAFT_0426at 405.907 kb on - strand, within EX28DRAFT_0426at 406.052 kb on + strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.074 kb on - strand, within EX28DRAFT_0426at 406.084 kb on + strand, within EX28DRAFT_0426at 406.086 kb on + strand, within EX28DRAFT_0426at 406.176 kb on - strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.216 kb on - strand, within EX28DRAFT_0426at 406.247 kb on + strand, within EX28DRAFT_0426at 406.248 kb on - strand, within EX28DRAFT_0426at 406.300 kb on - strandat 406.300 kb on - strandat 406.485 kb on + strandat 406.515 kb on + strand, within EX28DRAFT_0427at 406.516 kb on - strand, within EX28DRAFT_0427at 406.516 kb on - strand, within EX28DRAFT_0427at 406.518 kb on - strand, within EX28DRAFT_0427at 406.518 kb on - strand, within EX28DRAFT_0427at 406.523 kb on - strand, within EX28DRAFT_0427at 406.563 kb on + strand, within EX28DRAFT_0427at 406.564 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.707 kb on - strand, within EX28DRAFT_0427at 406.725 kb on + strand, within EX28DRAFT_0427at 406.837 kb on - strand, within EX28DRAFT_0427at 406.861 kb on - strand, within EX28DRAFT_0427at 406.910 kb on + strand, within EX28DRAFT_0427at 406.910 kb on + strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 407.016 kb on + strandat 407.017 kb on - strandat 407.017 kb on - strandat 407.206 kb on + strandat 407.234 kb on - strandat 407.269 kb on + strandat 407.270 kb on - strandat 407.270 kb on - strandat 407.284 kb on - strand, within EX28DRAFT_0428at 407.361 kb on + strand, within EX28DRAFT_0428at 407.362 kb on - strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.387 kb on - strand, within EX28DRAFT_0428at 407.494 kb on + strand, within EX28DRAFT_0428at 407.495 kb on - strand, within EX28DRAFT_0428at 407.561 kb on + strand, within EX28DRAFT_0428at 407.590 kb on + strand, within EX28DRAFT_0428at 407.694 kb on + strand, within EX28DRAFT_0428at 407.694 kb on + strand, within EX28DRAFT_0428at 407.694 kb on + strand, within EX28DRAFT_0428at 407.695 kb on - strand, within EX28DRAFT_0428at 407.695 kb on - strand, within EX28DRAFT_0428at 407.695 kb on - strand, within EX28DRAFT_0428at 407.699 kb on - strand, within EX28DRAFT_0428at 407.884 kb on + strand, within EX28DRAFT_0428at 407.884 kb on + strand, within EX28DRAFT_0428at 407.885 kb on - strand, within EX28DRAFT_0428

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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405,450 - -0.2
405,578 + EX28DRAFT_0426 0.17 -2.7
405,588 + EX28DRAFT_0426 0.18 -0.6
405,589 - EX28DRAFT_0426 0.18 +0.4
405,637 + EX28DRAFT_0426 0.23 -0.3
405,730 - EX28DRAFT_0426 0.33 +0.2
405,906 + EX28DRAFT_0426 0.52 +1.1
405,907 - EX28DRAFT_0426 0.52 -0.6
406,052 + EX28DRAFT_0426 0.68 +0.3
406,053 - EX28DRAFT_0426 0.68 +1.2
406,053 - EX28DRAFT_0426 0.68 +0.8
406,053 - EX28DRAFT_0426 0.68 -0.0
406,053 - EX28DRAFT_0426 0.68 +0.2
406,053 - EX28DRAFT_0426 0.68 -0.2
406,053 - EX28DRAFT_0426 0.68 -0.7
406,074 - EX28DRAFT_0426 0.70 +0.7
406,084 + EX28DRAFT_0426 0.72 -0.1
406,086 + EX28DRAFT_0426 0.72 +0.3
406,176 - EX28DRAFT_0426 0.81 -0.3
406,215 + EX28DRAFT_0426 0.86 -0.6
406,215 + EX28DRAFT_0426 0.86 +0.1
406,215 + EX28DRAFT_0426 0.86 +0.8
406,215 + EX28DRAFT_0426 0.86 +1.0
406,215 + EX28DRAFT_0426 0.86 +0.0
406,216 - EX28DRAFT_0426 0.86 +1.4
406,247 + EX28DRAFT_0426 0.89 +0.1
406,248 - EX28DRAFT_0426 0.89 -0.4
406,300 - -1.1
406,300 - +0.7
406,485 + -1.3
406,515 + EX28DRAFT_0427 0.13 +0.3
406,516 - EX28DRAFT_0427 0.14 +0.1
406,516 - EX28DRAFT_0427 0.14 -0.6
406,518 - EX28DRAFT_0427 0.14 +0.1
406,518 - EX28DRAFT_0427 0.14 +3.4
406,523 - EX28DRAFT_0427 0.15 -0.2
406,563 + EX28DRAFT_0427 0.22 +1.7
406,564 - EX28DRAFT_0427 0.22 +0.0
406,588 - EX28DRAFT_0427 0.26 -0.2
406,588 - EX28DRAFT_0427 0.26 -0.7
406,588 - EX28DRAFT_0427 0.26 -0.7
406,588 - EX28DRAFT_0427 0.26 +0.9
406,707 - EX28DRAFT_0427 0.48 +0.6
406,725 + EX28DRAFT_0427 0.51 -0.5
406,837 - EX28DRAFT_0427 0.71 +0.0
406,861 - EX28DRAFT_0427 0.76 -1.6
406,910 + EX28DRAFT_0427 0.85 -3.2
406,910 + EX28DRAFT_0427 0.85 +0.1
406,911 - EX28DRAFT_0427 0.85 +0.5
406,911 - EX28DRAFT_0427 0.85 -0.8
406,911 - EX28DRAFT_0427 0.85 +1.3
406,911 - EX28DRAFT_0427 0.85 +1.2
406,911 - EX28DRAFT_0427 0.85 -0.0
407,016 + -0.7
407,017 - -0.1
407,017 - +0.2
407,206 + +0.0
407,234 - +0.1
407,269 + +0.5
407,270 - +0.8
407,270 - -0.2
407,284 - EX28DRAFT_0428 0.10 +0.8
407,361 + EX28DRAFT_0428 0.14 +0.2
407,362 - EX28DRAFT_0428 0.15 +0.5
407,386 + EX28DRAFT_0428 0.16 -1.8
407,386 + EX28DRAFT_0428 0.16 -0.3
407,386 + EX28DRAFT_0428 0.16 +0.7
407,386 + EX28DRAFT_0428 0.16 -1.7
407,387 - EX28DRAFT_0428 0.16 +1.2
407,494 + EX28DRAFT_0428 0.22 +0.0
407,495 - EX28DRAFT_0428 0.22 +0.4
407,561 + EX28DRAFT_0428 0.26 +0.3
407,590 + EX28DRAFT_0428 0.28 +0.0
407,694 + EX28DRAFT_0428 0.34 +0.5
407,694 + EX28DRAFT_0428 0.34 +1.1
407,694 + EX28DRAFT_0428 0.34 -0.1
407,695 - EX28DRAFT_0428 0.34 +1.7
407,695 - EX28DRAFT_0428 0.34 +0.5
407,695 - EX28DRAFT_0428 0.34 -1.2
407,699 - EX28DRAFT_0428 0.34 -2.9
407,884 + EX28DRAFT_0428 0.44 -0.7
407,884 + EX28DRAFT_0428 0.44 -0.2
407,885 - EX28DRAFT_0428 0.44 -1.2

Or see this region's nucleotide sequence