Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0373

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0371 and EX28DRAFT_0372 are separated by 35 nucleotidesEX28DRAFT_0372 and EX28DRAFT_0373 are separated by 72 nucleotidesEX28DRAFT_0373 and EX28DRAFT_0374 are separated by 19 nucleotidesEX28DRAFT_0374 and EX28DRAFT_0375 are separated by 134 nucleotides EX28DRAFT_0371: EX28DRAFT_0371 - Arabinose efflux permease, at 342,855 to 344,042 _0371 EX28DRAFT_0372: EX28DRAFT_0372 - tRNA, at 344,078 to 344,154 _0372 EX28DRAFT_0373: EX28DRAFT_0373 - Predicted hydrolase of alkaline phosphatase superfamily, at 344,227 to 345,987 _0373 EX28DRAFT_0374: EX28DRAFT_0374 - Uncharacterized protein conserved in bacteria, at 346,007 to 346,234 _0374 EX28DRAFT_0375: EX28DRAFT_0375 - Nucleoid-associated protein, at 346,369 to 347,376 _0375 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 343.325 kb on - strand, within EX28DRAFT_0371at 343.334 kb on - strand, within EX28DRAFT_0371at 343.339 kb on + strand, within EX28DRAFT_0371at 343.419 kb on + strand, within EX28DRAFT_0371at 343.419 kb on + strand, within EX28DRAFT_0371at 343.463 kb on + strand, within EX28DRAFT_0371at 343.464 kb on - strand, within EX28DRAFT_0371at 343.464 kb on - strand, within EX28DRAFT_0371at 343.467 kb on - strand, within EX28DRAFT_0371at 343.467 kb on - strand, within EX28DRAFT_0371at 343.611 kb on - strand, within EX28DRAFT_0371at 343.644 kb on + strand, within EX28DRAFT_0371at 343.645 kb on - strand, within EX28DRAFT_0371at 343.645 kb on - strand, within EX28DRAFT_0371at 343.780 kb on + strand, within EX28DRAFT_0371at 343.801 kb on + strand, within EX28DRAFT_0371at 343.801 kb on + strand, within EX28DRAFT_0371at 343.801 kb on + strand, within EX28DRAFT_0371at 343.802 kb on - strand, within EX28DRAFT_0371at 343.802 kb on - strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.806 kb on - strand, within EX28DRAFT_0371at 343.806 kb on - strand, within EX28DRAFT_0371at 343.912 kb on + strand, within EX28DRAFT_0371at 343.967 kb on + strandat 343.967 kb on + strandat 344.010 kb on + strandat 344.010 kb on + strandat 344.010 kb on + strandat 344.011 kb on - strandat 344.011 kb on - strandat 344.319 kb on + strandat 344.320 kb on - strandat 344.320 kb on - strandat 344.320 kb on - strandat 344.320 kb on - strandat 344.321 kb on + strandat 344.321 kb on + strandat 344.322 kb on - strandat 344.385 kb on + strandat 344.385 kb on + strandat 344.388 kb on + strandat 344.389 kb on - strandat 344.515 kb on - strand, within EX28DRAFT_0373at 344.515 kb on - strand, within EX28DRAFT_0373at 344.529 kb on + strand, within EX28DRAFT_0373at 344.604 kb on + strand, within EX28DRAFT_0373at 344.604 kb on + strand, within EX28DRAFT_0373at 344.715 kb on + strand, within EX28DRAFT_0373at 344.763 kb on + strand, within EX28DRAFT_0373at 344.764 kb on - strand, within EX28DRAFT_0373at 344.965 kb on + strand, within EX28DRAFT_0373at 344.973 kb on - strand, within EX28DRAFT_0373at 345.026 kb on - strand, within EX28DRAFT_0373at 345.026 kb on - strand, within EX28DRAFT_0373at 345.036 kb on + strand, within EX28DRAFT_0373at 345.036 kb on + strand, within EX28DRAFT_0373at 345.038 kb on + strand, within EX28DRAFT_0373at 345.039 kb on - strand, within EX28DRAFT_0373at 345.056 kb on + strand, within EX28DRAFT_0373at 345.102 kb on + strand, within EX28DRAFT_0373at 345.103 kb on - strand, within EX28DRAFT_0373at 345.103 kb on - strand, within EX28DRAFT_0373at 345.173 kb on + strand, within EX28DRAFT_0373at 346.118 kb on - strand, within EX28DRAFT_0374at 346.170 kb on - strand, within EX28DRAFT_0374at 346.270 kb on - strandat 346.270 kb on - strandat 346.270 kb on - strandat 346.407 kb on + strandat 346.739 kb on + strand, within EX28DRAFT_0375

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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343,325 - EX28DRAFT_0371 0.40 -0.6
343,334 - EX28DRAFT_0371 0.40 -0.2
343,339 + EX28DRAFT_0371 0.41 -2.9
343,419 + EX28DRAFT_0371 0.47 +0.8
343,419 + EX28DRAFT_0371 0.47 -0.2
343,463 + EX28DRAFT_0371 0.51 -0.0
343,464 - EX28DRAFT_0371 0.51 -1.3
343,464 - EX28DRAFT_0371 0.51 -0.3
343,467 - EX28DRAFT_0371 0.52 +0.4
343,467 - EX28DRAFT_0371 0.52 -0.6
343,611 - EX28DRAFT_0371 0.64 -0.4
343,644 + EX28DRAFT_0371 0.66 +0.7
343,645 - EX28DRAFT_0371 0.66 -1.8
343,645 - EX28DRAFT_0371 0.66 +0.3
343,780 + EX28DRAFT_0371 0.78 -0.9
343,801 + EX28DRAFT_0371 0.80 +0.1
343,801 + EX28DRAFT_0371 0.80 -0.6
343,801 + EX28DRAFT_0371 0.80 -0.2
343,802 - EX28DRAFT_0371 0.80 -0.6
343,802 - EX28DRAFT_0371 0.80 -0.2
343,805 + EX28DRAFT_0371 0.80 -0.0
343,805 + EX28DRAFT_0371 0.80 -0.8
343,805 + EX28DRAFT_0371 0.80 -1.5
343,805 + EX28DRAFT_0371 0.80 +0.3
343,805 + EX28DRAFT_0371 0.80 +0.5
343,805 + EX28DRAFT_0371 0.80 +0.6
343,805 + EX28DRAFT_0371 0.80 -1.2
343,806 - EX28DRAFT_0371 0.80 +0.4
343,806 - EX28DRAFT_0371 0.80 -0.4
343,912 + EX28DRAFT_0371 0.89 -1.4
343,967 + -0.4
343,967 + +0.8
344,010 + -0.1
344,010 + +0.3
344,010 + -2.3
344,011 - +0.2
344,011 - -0.8
344,319 + -0.2
344,320 - +1.1
344,320 - +0.7
344,320 - +1.5
344,320 - -0.9
344,321 + +0.9
344,321 + +0.7
344,322 - +0.5
344,385 + +1.3
344,385 + -0.2
344,388 + +0.5
344,389 - +0.3
344,515 - EX28DRAFT_0373 0.16 +0.7
344,515 - EX28DRAFT_0373 0.16 -1.8
344,529 + EX28DRAFT_0373 0.17 -0.4
344,604 + EX28DRAFT_0373 0.21 -0.0
344,604 + EX28DRAFT_0373 0.21 +0.1
344,715 + EX28DRAFT_0373 0.28 +1.6
344,763 + EX28DRAFT_0373 0.30 +0.9
344,764 - EX28DRAFT_0373 0.30 +0.8
344,965 + EX28DRAFT_0373 0.42 +0.6
344,973 - EX28DRAFT_0373 0.42 +0.6
345,026 - EX28DRAFT_0373 0.45 +0.2
345,026 - EX28DRAFT_0373 0.45 -0.5
345,036 + EX28DRAFT_0373 0.46 +1.2
345,036 + EX28DRAFT_0373 0.46 +1.1
345,038 + EX28DRAFT_0373 0.46 +0.4
345,039 - EX28DRAFT_0373 0.46 +1.8
345,056 + EX28DRAFT_0373 0.47 -0.0
345,102 + EX28DRAFT_0373 0.50 +1.3
345,103 - EX28DRAFT_0373 0.50 +0.9
345,103 - EX28DRAFT_0373 0.50 +0.1
345,173 + EX28DRAFT_0373 0.54 -3.2
346,118 - EX28DRAFT_0374 0.49 -0.2
346,170 - EX28DRAFT_0374 0.71 +0.8
346,270 - -0.7
346,270 - +0.8
346,270 - -0.9
346,407 + +0.7
346,739 + EX28DRAFT_0375 0.37 -0.5

Or see this region's nucleotide sequence