Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0351 and EX28DRAFT_0352 are separated by 105 nucleotides EX28DRAFT_0352 and EX28DRAFT_0353 overlap by 1 nucleotides
EX28DRAFT_0351: EX28DRAFT_0351 - Glycerophosphoryl diester phosphodiesterase, at 315,250 to 316,308
_0351
EX28DRAFT_0352: EX28DRAFT_0352 - Ferredoxin, at 316,414 to 316,668
_0352
EX28DRAFT_0353: EX28DRAFT_0353 - Ribonucleotide reductase, beta subunit, at 316,668 to 317,798
_0353
Position (kb) 316
317 Strain fitness (log2 ratio) -1
0
1 at 315.472 kb on + strand, within EX28DRAFT_0351 at 315.473 kb on - strand, within EX28DRAFT_0351 at 315.670 kb on - strand, within EX28DRAFT_0351 at 315.943 kb on + strand, within EX28DRAFT_0351 at 315.998 kb on - strand, within EX28DRAFT_0351 at 316.004 kb on - strand, within EX28DRAFT_0351 at 316.199 kb on - strand, within EX28DRAFT_0351 at 316.222 kb on + strand at 316.222 kb on + strand at 316.235 kb on - strand at 316.237 kb on - strand at 316.278 kb on + strand at 316.312 kb on + strand at 316.312 kb on + strand at 316.313 kb on - strand at 316.378 kb on - strand at 316.548 kb on - strand, within EX28DRAFT_0352 at 316.566 kb on - strand, within EX28DRAFT_0352 at 316.566 kb on - strand, within EX28DRAFT_0352 at 316.570 kb on + strand, within EX28DRAFT_0352 at 316.570 kb on + strand, within EX28DRAFT_0352 at 316.571 kb on - strand, within EX28DRAFT_0352 at 316.571 kb on - strand, within EX28DRAFT_0352 at 316.576 kb on + strand, within EX28DRAFT_0352 at 316.577 kb on - strand, within EX28DRAFT_0352
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 315,472 + EX28DRAFT_0351 0.21 +0.0 315,473 - EX28DRAFT_0351 0.21 +0.4 315,670 - EX28DRAFT_0351 0.40 -0.5 315,943 + EX28DRAFT_0351 0.65 +0.9 315,998 - EX28DRAFT_0351 0.71 +0.0 316,004 - EX28DRAFT_0351 0.71 -0.6 316,199 - EX28DRAFT_0351 0.90 -0.3 316,222 + +0.3 316,222 + +0.6 316,235 - -0.5 316,237 - +0.8 316,278 + -0.5 316,312 + +0.1 316,312 + +0.3 316,313 - -1.0 316,378 - +0.7 316,548 - EX28DRAFT_0352 0.53 +1.0 316,566 - EX28DRAFT_0352 0.60 +0.7 316,566 - EX28DRAFT_0352 0.60 +0.6 316,570 + EX28DRAFT_0352 0.61 -0.6 316,570 + EX28DRAFT_0352 0.61 +0.8 316,571 - EX28DRAFT_0352 0.62 -0.4 316,571 - EX28DRAFT_0352 0.62 +0.4 316,576 + EX28DRAFT_0352 0.64 +0.4 316,577 - EX28DRAFT_0352 0.64 +0.0
Or see this region's nucleotide sequence