Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0317 and EX28DRAFT_0318 are separated by 81 nucleotides EX28DRAFT_0318 and EX28DRAFT_0319 are separated by 94 nucleotides
EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120
_0317
EX28DRAFT_0318: EX28DRAFT_0318 - Predicted hydrolases of HD superfamily, at 278,202 to 278,801
_0318
EX28DRAFT_0319: EX28DRAFT_0319 - Aspartate/tyrosine/aromatic aminotransferase, at 278,896 to 280,110
_0319
Position (kb) 278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 277.619 kb on + strand, within EX28DRAFT_0317 at 277.671 kb on + strand, within EX28DRAFT_0317 at 277.673 kb on + strand, within EX28DRAFT_0317 at 277.674 kb on - strand, within EX28DRAFT_0317 at 277.803 kb on + strand, within EX28DRAFT_0317 at 277.827 kb on - strand, within EX28DRAFT_0317 at 277.853 kb on + strand, within EX28DRAFT_0317 at 278.203 kb on + strand at 278.239 kb on - strand at 278.268 kb on - strand, within EX28DRAFT_0318 at 278.273 kb on - strand, within EX28DRAFT_0318 at 278.522 kb on + strand, within EX28DRAFT_0318 at 278.522 kb on + strand, within EX28DRAFT_0318 at 278.523 kb on - strand, within EX28DRAFT_0318 at 278.523 kb on - strand, within EX28DRAFT_0318 at 278.524 kb on + strand, within EX28DRAFT_0318 at 278.603 kb on - strand, within EX28DRAFT_0318 at 278.802 kb on - strand at 278.802 kb on - strand at 278.806 kb on + strand at 278.891 kb on + strand at 278.891 kb on + strand at 279.078 kb on + strand, within EX28DRAFT_0319 at 279.111 kb on + strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.112 kb on - strand, within EX28DRAFT_0319 at 279.113 kb on + strand, within EX28DRAFT_0319 at 279.113 kb on + strand, within EX28DRAFT_0319 at 279.114 kb on - strand, within EX28DRAFT_0319 at 279.191 kb on + strand, within EX28DRAFT_0319 at 279.192 kb on - strand, within EX28DRAFT_0319 at 279.283 kb on + strand, within EX28DRAFT_0319 at 279.319 kb on - strand, within EX28DRAFT_0319 at 279.320 kb on + strand, within EX28DRAFT_0319 at 279.352 kb on + strand, within EX28DRAFT_0319 at 279.505 kb on + strand, within EX28DRAFT_0319 at 279.506 kb on - strand, within EX28DRAFT_0319 at 279.506 kb on - strand, within EX28DRAFT_0319 at 279.506 kb on - strand, within EX28DRAFT_0319 at 279.506 kb on - strand, within EX28DRAFT_0319 at 279.506 kb on - strand, within EX28DRAFT_0319
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 277,619 + EX28DRAFT_0317 0.73 -0.2 277,671 + EX28DRAFT_0317 0.75 +0.5 277,673 + EX28DRAFT_0317 0.76 +0.2 277,674 - EX28DRAFT_0317 0.76 +0.6 277,803 + EX28DRAFT_0317 0.83 +0.2 277,827 - EX28DRAFT_0317 0.84 +0.1 277,853 + EX28DRAFT_0317 0.85 -0.4 278,203 + +0.7 278,239 - +0.8 278,268 - EX28DRAFT_0318 0.11 +0.8 278,273 - EX28DRAFT_0318 0.12 -0.6 278,522 + EX28DRAFT_0318 0.53 -0.4 278,522 + EX28DRAFT_0318 0.53 +1.2 278,523 - EX28DRAFT_0318 0.54 -1.0 278,523 - EX28DRAFT_0318 0.54 +0.4 278,524 + EX28DRAFT_0318 0.54 -0.9 278,603 - EX28DRAFT_0318 0.67 -0.4 278,802 - +0.1 278,802 - -0.0 278,806 + -0.3 278,891 + -1.9 278,891 + +0.4 279,078 + EX28DRAFT_0319 0.15 -0.7 279,111 + EX28DRAFT_0319 0.18 -1.0 279,112 - EX28DRAFT_0319 0.18 -0.3 279,112 - EX28DRAFT_0319 0.18 +0.1 279,112 - EX28DRAFT_0319 0.18 +0.5 279,112 - EX28DRAFT_0319 0.18 +0.2 279,112 - EX28DRAFT_0319 0.18 +0.6 279,112 - EX28DRAFT_0319 0.18 +0.9 279,112 - EX28DRAFT_0319 0.18 -0.5 279,112 - EX28DRAFT_0319 0.18 -0.6 279,113 + EX28DRAFT_0319 0.18 +0.3 279,113 + EX28DRAFT_0319 0.18 -0.6 279,114 - EX28DRAFT_0319 0.18 -0.7 279,191 + EX28DRAFT_0319 0.24 -0.9 279,192 - EX28DRAFT_0319 0.24 -0.1 279,283 + EX28DRAFT_0319 0.32 +1.9 279,319 - EX28DRAFT_0319 0.35 +0.0 279,320 + EX28DRAFT_0319 0.35 -0.3 279,352 + EX28DRAFT_0319 0.38 +0.3 279,505 + EX28DRAFT_0319 0.50 +1.6 279,506 - EX28DRAFT_0319 0.50 -2.4 279,506 - EX28DRAFT_0319 0.50 -3.5 279,506 - EX28DRAFT_0319 0.50 +1.0 279,506 - EX28DRAFT_0319 0.50 -0.2 279,506 - EX28DRAFT_0319 0.50 -0.4
Or see this region's nucleotide sequence