Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0257

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0256 and EX28DRAFT_0257 overlap by 53 nucleotidesEX28DRAFT_0257 and EX28DRAFT_0258 overlap by 1 nucleotides EX28DRAFT_0256: EX28DRAFT_0256 - hypothetical protein, at 214,854 to 216,029 _0256 EX28DRAFT_0257: EX28DRAFT_0257 - Uncharacterized protein conserved in bacteria, at 215,977 to 219,456 _0257 EX28DRAFT_0258: EX28DRAFT_0258 - type VI secretion-associated protein, VC_A0119 family, at 219,456 to 221,057 _0258 Position (kb) 215 216 217 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 215.383 kb on + strand, within EX28DRAFT_0256at 215.676 kb on - strand, within EX28DRAFT_0256at 215.723 kb on + strand, within EX28DRAFT_0256at 215.807 kb on - strand, within EX28DRAFT_0256at 216.294 kb on + strandat 216.334 kb on + strand, within EX28DRAFT_0257at 216.335 kb on - strand, within EX28DRAFT_0257at 216.387 kb on - strand, within EX28DRAFT_0257at 216.592 kb on - strand, within EX28DRAFT_0257at 216.711 kb on + strand, within EX28DRAFT_0257at 216.785 kb on + strand, within EX28DRAFT_0257at 216.786 kb on - strand, within EX28DRAFT_0257at 216.920 kb on - strand, within EX28DRAFT_0257at 216.920 kb on - strand, within EX28DRAFT_0257at 216.921 kb on + strand, within EX28DRAFT_0257at 216.921 kb on + strand, within EX28DRAFT_0257at 216.921 kb on + strand, within EX28DRAFT_0257at 216.921 kb on + strand, within EX28DRAFT_0257at 216.922 kb on - strand, within EX28DRAFT_0257at 216.922 kb on - strand, within EX28DRAFT_0257at 216.922 kb on - strand, within EX28DRAFT_0257at 217.018 kb on + strand, within EX28DRAFT_0257at 217.036 kb on + strand, within EX28DRAFT_0257at 217.036 kb on + strand, within EX28DRAFT_0257at 217.037 kb on - strand, within EX28DRAFT_0257at 217.037 kb on - strand, within EX28DRAFT_0257at 217.038 kb on + strand, within EX28DRAFT_0257at 217.038 kb on + strand, within EX28DRAFT_0257at 217.039 kb on - strand, within EX28DRAFT_0257at 217.065 kb on - strand, within EX28DRAFT_0257at 217.160 kb on + strand, within EX28DRAFT_0257at 217.160 kb on + strand, within EX28DRAFT_0257at 217.161 kb on - strand, within EX28DRAFT_0257at 217.181 kb on + strand, within EX28DRAFT_0257at 217.181 kb on + strand, within EX28DRAFT_0257at 217.204 kb on + strand, within EX28DRAFT_0257at 217.214 kb on + strand, within EX28DRAFT_0257at 217.270 kb on + strand, within EX28DRAFT_0257at 217.431 kb on - strand, within EX28DRAFT_0257at 217.540 kb on - strand, within EX28DRAFT_0257at 217.589 kb on - strand, within EX28DRAFT_0257at 217.599 kb on + strand, within EX28DRAFT_0257at 217.599 kb on + strand, within EX28DRAFT_0257at 217.599 kb on + strand, within EX28DRAFT_0257at 217.600 kb on - strand, within EX28DRAFT_0257at 217.678 kb on + strand, within EX28DRAFT_0257at 217.678 kb on + strand, within EX28DRAFT_0257at 217.679 kb on - strand, within EX28DRAFT_0257at 217.679 kb on - strand, within EX28DRAFT_0257at 217.679 kb on - strand, within EX28DRAFT_0257at 217.679 kb on - strand, within EX28DRAFT_0257at 217.681 kb on - strand, within EX28DRAFT_0257at 217.812 kb on + strand, within EX28DRAFT_0257at 218.022 kb on - strand, within EX28DRAFT_0257at 218.139 kb on + strand, within EX28DRAFT_0257at 218.440 kb on + strand, within EX28DRAFT_0257at 218.440 kb on + strand, within EX28DRAFT_0257at 218.534 kb on + strand, within EX28DRAFT_0257at 218.575 kb on + strand, within EX28DRAFT_0257at 218.575 kb on + strand, within EX28DRAFT_0257at 218.812 kb on - strand, within EX28DRAFT_0257at 218.828 kb on + strand, within EX28DRAFT_0257at 218.828 kb on + strand, within EX28DRAFT_0257at 218.828 kb on + strand, within EX28DRAFT_0257at 219.038 kb on + strand, within EX28DRAFT_0257at 219.039 kb on - strand, within EX28DRAFT_0257at 219.050 kb on + strand, within EX28DRAFT_0257at 219.050 kb on + strand, within EX28DRAFT_0257at 219.077 kb on - strand, within EX28DRAFT_0257at 219.127 kb on + strandat 219.128 kb on - strandat 219.128 kb on - strandat 219.128 kb on - strandat 219.130 kb on - strandat 219.271 kb on + strandat 219.271 kb on + strandat 219.271 kb on + strandat 219.272 kb on - strandat 219.272 kb on - strandat 219.272 kb on - strandat 219.618 kb on - strand, within EX28DRAFT_0258at 219.618 kb on - strand, within EX28DRAFT_0258at 219.619 kb on + strand, within EX28DRAFT_0258at 219.619 kb on + strand, within EX28DRAFT_0258at 219.713 kb on + strand, within EX28DRAFT_0258at 219.723 kb on + strand, within EX28DRAFT_0258at 219.723 kb on + strand, within EX28DRAFT_0258at 219.724 kb on - strand, within EX28DRAFT_0258at 219.724 kb on - strand, within EX28DRAFT_0258at 219.726 kb on + strand, within EX28DRAFT_0258at 219.927 kb on - strand, within EX28DRAFT_0258at 220.011 kb on + strand, within EX28DRAFT_0258at 220.079 kb on + strand, within EX28DRAFT_0258at 220.191 kb on + strand, within EX28DRAFT_0258at 220.372 kb on + strand, within EX28DRAFT_0258at 220.437 kb on + strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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215,383 + EX28DRAFT_0256 0.45 -1.2
215,676 - EX28DRAFT_0256 0.70 -0.6
215,723 + EX28DRAFT_0256 0.74 +0.1
215,807 - EX28DRAFT_0256 0.81 +0.1
216,294 + -0.6
216,334 + EX28DRAFT_0257 0.10 -0.5
216,335 - EX28DRAFT_0257 0.10 -0.5
216,387 - EX28DRAFT_0257 0.12 +0.4
216,592 - EX28DRAFT_0257 0.18 +0.1
216,711 + EX28DRAFT_0257 0.21 -1.7
216,785 + EX28DRAFT_0257 0.23 +0.9
216,786 - EX28DRAFT_0257 0.23 -0.6
216,920 - EX28DRAFT_0257 0.27 +0.2
216,920 - EX28DRAFT_0257 0.27 +1.0
216,921 + EX28DRAFT_0257 0.27 -0.4
216,921 + EX28DRAFT_0257 0.27 -0.2
216,921 + EX28DRAFT_0257 0.27 +0.4
216,921 + EX28DRAFT_0257 0.27 -0.6
216,922 - EX28DRAFT_0257 0.27 -1.9
216,922 - EX28DRAFT_0257 0.27 +0.2
216,922 - EX28DRAFT_0257 0.27 +3.2
217,018 + EX28DRAFT_0257 0.30 +4.2
217,036 + EX28DRAFT_0257 0.30 -0.0
217,036 + EX28DRAFT_0257 0.30 +1.1
217,037 - EX28DRAFT_0257 0.30 +0.5
217,037 - EX28DRAFT_0257 0.30 +0.1
217,038 + EX28DRAFT_0257 0.30 -0.1
217,038 + EX28DRAFT_0257 0.30 +0.0
217,039 - EX28DRAFT_0257 0.31 +0.4
217,065 - EX28DRAFT_0257 0.31 +0.8
217,160 + EX28DRAFT_0257 0.34 -1.1
217,160 + EX28DRAFT_0257 0.34 +0.4
217,161 - EX28DRAFT_0257 0.34 +1.5
217,181 + EX28DRAFT_0257 0.35 -0.2
217,181 + EX28DRAFT_0257 0.35 +2.1
217,204 + EX28DRAFT_0257 0.35 -0.1
217,214 + EX28DRAFT_0257 0.36 -0.0
217,270 + EX28DRAFT_0257 0.37 +0.6
217,431 - EX28DRAFT_0257 0.42 +0.0
217,540 - EX28DRAFT_0257 0.45 +0.2
217,589 - EX28DRAFT_0257 0.46 -1.0
217,599 + EX28DRAFT_0257 0.47 +0.5
217,599 + EX28DRAFT_0257 0.47 +0.9
217,599 + EX28DRAFT_0257 0.47 +0.4
217,600 - EX28DRAFT_0257 0.47 +0.0
217,678 + EX28DRAFT_0257 0.49 +0.7
217,678 + EX28DRAFT_0257 0.49 +0.0
217,679 - EX28DRAFT_0257 0.49 +0.5
217,679 - EX28DRAFT_0257 0.49 +0.6
217,679 - EX28DRAFT_0257 0.49 +0.9
217,679 - EX28DRAFT_0257 0.49 -0.1
217,681 - EX28DRAFT_0257 0.49 +0.4
217,812 + EX28DRAFT_0257 0.53 -0.1
218,022 - EX28DRAFT_0257 0.59 -0.3
218,139 + EX28DRAFT_0257 0.62 +3.9
218,440 + EX28DRAFT_0257 0.71 -0.3
218,440 + EX28DRAFT_0257 0.71 -0.6
218,534 + EX28DRAFT_0257 0.73 -0.8
218,575 + EX28DRAFT_0257 0.75 +1.7
218,575 + EX28DRAFT_0257 0.75 -0.2
218,812 - EX28DRAFT_0257 0.81 -0.2
218,828 + EX28DRAFT_0257 0.82 +0.3
218,828 + EX28DRAFT_0257 0.82 -0.1
218,828 + EX28DRAFT_0257 0.82 +0.1
219,038 + EX28DRAFT_0257 0.88 +0.7
219,039 - EX28DRAFT_0257 0.88 -0.0
219,050 + EX28DRAFT_0257 0.88 +0.6
219,050 + EX28DRAFT_0257 0.88 -2.2
219,077 - EX28DRAFT_0257 0.89 -0.0
219,127 + +0.1
219,128 - +1.4
219,128 - +1.9
219,128 - -0.4
219,130 - -0.2
219,271 + +0.3
219,271 + +0.6
219,271 + +0.0
219,272 - +0.0
219,272 - +1.1
219,272 - -2.9
219,618 - EX28DRAFT_0258 0.10 -0.1
219,618 - EX28DRAFT_0258 0.10 -0.4
219,619 + EX28DRAFT_0258 0.10 -1.0
219,619 + EX28DRAFT_0258 0.10 -0.5
219,713 + EX28DRAFT_0258 0.16 +0.5
219,723 + EX28DRAFT_0258 0.17 +0.2
219,723 + EX28DRAFT_0258 0.17 -0.1
219,724 - EX28DRAFT_0258 0.17 -0.1
219,724 - EX28DRAFT_0258 0.17 -0.5
219,726 + EX28DRAFT_0258 0.17 -0.4
219,927 - EX28DRAFT_0258 0.29 -0.3
220,011 + EX28DRAFT_0258 0.35 -0.6
220,079 + EX28DRAFT_0258 0.39 +0.0
220,191 + EX28DRAFT_0258 0.46 -0.7
220,372 + EX28DRAFT_0258 0.57 -0.4
220,437 + EX28DRAFT_0258 0.61 -0.1
220,438 - EX28DRAFT_0258 0.61 -0.9
220,438 - EX28DRAFT_0258 0.61 -0.7
220,438 - EX28DRAFT_0258 0.61 +0.6
220,438 - EX28DRAFT_0258 0.61 -0.4

Or see this region's nucleotide sequence