Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0253 and EX28DRAFT_0254 are separated by 29 nucleotides EX28DRAFT_0254 and EX28DRAFT_0255 are separated by 247 nucleotides EX28DRAFT_0255 and EX28DRAFT_0256 are separated by 139 nucleotides
EX28DRAFT_0253: EX28DRAFT_0253 - hypothetical protein, at 212,534 to 213,403
_0253
EX28DRAFT_0254: EX28DRAFT_0254 - hypothetical protein, at 213,433 to 213,651
_0254
EX28DRAFT_0255: EX28DRAFT_0255 - Domain of unknown function (DUF4123), at 213,899 to 214,714
_0255
EX28DRAFT_0256: EX28DRAFT_0256 - hypothetical protein, at 214,854 to 216,029
_0256
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 212.912 kb on + strand, within EX28DRAFT_0253 at 212.958 kb on + strand, within EX28DRAFT_0253 at 212.958 kb on + strand, within EX28DRAFT_0253 at 212.959 kb on - strand, within EX28DRAFT_0253 at 212.974 kb on + strand, within EX28DRAFT_0253 at 212.993 kb on - strand, within EX28DRAFT_0253 at 213.014 kb on - strand, within EX28DRAFT_0253 at 213.024 kb on + strand, within EX28DRAFT_0253 at 213.031 kb on + strand, within EX28DRAFT_0253 at 213.033 kb on + strand, within EX28DRAFT_0253 at 213.584 kb on + strand, within EX28DRAFT_0254 at 214.145 kb on - strand, within EX28DRAFT_0255 at 214.415 kb on - strand, within EX28DRAFT_0255 at 214.657 kb on + strand at 214.658 kb on - strand at 214.873 kb on + strand at 215.383 kb on + strand, within EX28DRAFT_0256 at 215.676 kb on - strand, within EX28DRAFT_0256
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 212,912 + EX28DRAFT_0253 0.43 -0.1 212,958 + EX28DRAFT_0253 0.49 +0.6 212,958 + EX28DRAFT_0253 0.49 -0.1 212,959 - EX28DRAFT_0253 0.49 +0.4 212,974 + EX28DRAFT_0253 0.51 -0.6 212,993 - EX28DRAFT_0253 0.53 +0.5 213,014 - EX28DRAFT_0253 0.55 -3.3 213,024 + EX28DRAFT_0253 0.56 +0.8 213,031 + EX28DRAFT_0253 0.57 +0.2 213,033 + EX28DRAFT_0253 0.57 +0.3 213,584 + EX28DRAFT_0254 0.69 +0.8 214,145 - EX28DRAFT_0255 0.30 -1.7 214,415 - EX28DRAFT_0255 0.63 -0.4 214,657 + -0.9 214,658 - +0.7 214,873 + -1.0 215,383 + EX28DRAFT_0256 0.45 -1.2 215,676 - EX28DRAFT_0256 0.70 -0.6
Or see this region's nucleotide sequence