Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0096 and EX28DRAFT_0097 are separated by 65 nucleotides EX28DRAFT_0097 and EX28DRAFT_0098 are separated by 82 nucleotides EX28DRAFT_0098 and EX28DRAFT_0099 are separated by 304 nucleotides
EX28DRAFT_0096: EX28DRAFT_0096 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 36,967 to 38,304
_0096
EX28DRAFT_0097: EX28DRAFT_0097 - nitrogen regulatory protein P-II family, at 38,370 to 38,708
_0097
EX28DRAFT_0098: EX28DRAFT_0098 - Hemoglobin-like flavoprotein/Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 38,791 to 39,981
_0098
EX28DRAFT_0099: EX28DRAFT_0099 - Glycine/serine hydroxymethyltransferase, at 40,286 to 41,539
_0099
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 37.849 kb on + strand, within EX28DRAFT_0096 at 38.186 kb on + strand at 38.187 kb on - strand at 38.187 kb on - strand at 38.196 kb on + strand at 38.255 kb on - strand at 38.295 kb on + strand at 38.303 kb on - strand at 38.303 kb on - strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.520 kb on + strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.573 kb on + strand, within EX28DRAFT_0097 at 38.595 kb on - strand, within EX28DRAFT_0097 at 38.706 kb on + strand at 38.706 kb on + strand at 38.727 kb on - strand at 38.874 kb on - strand at 38.904 kb on - strand at 38.904 kb on - strand at 39.113 kb on - strand, within EX28DRAFT_0098 at 39.271 kb on - strand, within EX28DRAFT_0098 at 39.366 kb on - strand, within EX28DRAFT_0098 at 39.366 kb on - strand, within EX28DRAFT_0098 at 39.484 kb on + strand, within EX28DRAFT_0098 at 39.485 kb on - strand, within EX28DRAFT_0098 at 39.566 kb on + strand, within EX28DRAFT_0098 at 39.567 kb on - strand, within EX28DRAFT_0098 at 39.698 kb on + strand, within EX28DRAFT_0098 at 39.698 kb on + strand, within EX28DRAFT_0098 at 40.053 kb on - strand at 40.078 kb on + strand at 40.191 kb on + strand at 40.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 37,849 + EX28DRAFT_0096 0.66 +0.7 38,186 + -0.7 38,187 - -0.2 38,187 - -0.4 38,196 + -0.4 38,255 - -0.8 38,295 + -0.8 38,303 - -0.2 38,303 - -1.2 38,344 + +1.6 38,344 + -0.2 38,520 + EX28DRAFT_0097 0.44 -0.3 38,521 - EX28DRAFT_0097 0.45 -0.2 38,521 - EX28DRAFT_0097 0.45 -2.4 38,521 - EX28DRAFT_0097 0.45 -0.4 38,521 - EX28DRAFT_0097 0.45 -0.1 38,521 - EX28DRAFT_0097 0.45 -0.7 38,573 + EX28DRAFT_0097 0.60 -0.7 38,595 - EX28DRAFT_0097 0.66 -0.1 38,706 + -0.3 38,706 + +0.5 38,727 - +0.1 38,874 - -1.0 38,904 - -0.6 38,904 - +1.4 39,113 - EX28DRAFT_0098 0.27 +1.2 39,271 - EX28DRAFT_0098 0.40 +0.1 39,366 - EX28DRAFT_0098 0.48 +0.2 39,366 - EX28DRAFT_0098 0.48 +0.9 39,484 + EX28DRAFT_0098 0.58 -0.0 39,485 - EX28DRAFT_0098 0.58 +0.4 39,566 + EX28DRAFT_0098 0.65 +0.2 39,567 - EX28DRAFT_0098 0.65 -1.6 39,698 + EX28DRAFT_0098 0.76 -0.1 39,698 + EX28DRAFT_0098 0.76 +1.3 40,053 - -0.3 40,078 + -0.5 40,191 + -0.1 40,210 + -0.3
Or see this region's nucleotide sequence