Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0095

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0094 and EX28DRAFT_0095 are separated by 1 nucleotidesEX28DRAFT_0095 and EX28DRAFT_0096 overlap by 14 nucleotides EX28DRAFT_0094: EX28DRAFT_0094 - Signal transduction histidine kinase, at 34,814 to 36,241 _0094 EX28DRAFT_0095: EX28DRAFT_0095 - YfhG lipoprotein, at 36,243 to 36,980 _0095 EX28DRAFT_0096: EX28DRAFT_0096 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 36,967 to 38,304 _0096 Position (kb) 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 35.431 kb on + strand, within EX28DRAFT_0094at 35.432 kb on - strand, within EX28DRAFT_0094at 35.508 kb on + strand, within EX28DRAFT_0094at 35.509 kb on - strand, within EX28DRAFT_0094at 35.509 kb on - strand, within EX28DRAFT_0094at 35.522 kb on - strand, within EX28DRAFT_0094at 35.596 kb on + strand, within EX28DRAFT_0094at 35.745 kb on - strand, within EX28DRAFT_0094at 35.746 kb on + strand, within EX28DRAFT_0094at 35.828 kb on - strand, within EX28DRAFT_0094at 35.845 kb on + strand, within EX28DRAFT_0094at 35.845 kb on + strand, within EX28DRAFT_0094at 35.845 kb on + strand, within EX28DRAFT_0094at 35.899 kb on + strand, within EX28DRAFT_0094at 35.899 kb on + strand, within EX28DRAFT_0094at 35.931 kb on - strand, within EX28DRAFT_0094at 35.972 kb on + strand, within EX28DRAFT_0094at 35.972 kb on + strand, within EX28DRAFT_0094at 35.973 kb on - strand, within EX28DRAFT_0094at 35.986 kb on + strand, within EX28DRAFT_0094at 35.986 kb on + strand, within EX28DRAFT_0094at 36.007 kb on + strand, within EX28DRAFT_0094at 36.008 kb on - strand, within EX28DRAFT_0094at 36.168 kb on + strandat 36.168 kb on + strandat 36.250 kb on + strandat 36.251 kb on - strandat 36.263 kb on + strandat 36.264 kb on - strandat 36.398 kb on + strand, within EX28DRAFT_0095at 36.398 kb on + strand, within EX28DRAFT_0095at 36.399 kb on - strand, within EX28DRAFT_0095at 36.399 kb on - strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.801 kb on - strand, within EX28DRAFT_0095at 36.801 kb on - strand, within EX28DRAFT_0095at 36.826 kb on + strand, within EX28DRAFT_0095at 36.826 kb on + strand, within EX28DRAFT_0095at 36.831 kb on - strand, within EX28DRAFT_0095at 36.831 kb on - strand, within EX28DRAFT_0095at 37.023 kb on - strandat 37.309 kb on + strand, within EX28DRAFT_0096at 37.309 kb on + strand, within EX28DRAFT_0096at 37.310 kb on - strand, within EX28DRAFT_0096at 37.312 kb on - strand, within EX28DRAFT_0096at 37.312 kb on - strand, within EX28DRAFT_0096at 37.849 kb on + strand, within EX28DRAFT_0096

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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35,431 + EX28DRAFT_0094 0.43 +1.0
35,432 - EX28DRAFT_0094 0.43 +0.2
35,508 + EX28DRAFT_0094 0.49 -0.3
35,509 - EX28DRAFT_0094 0.49 -0.9
35,509 - EX28DRAFT_0094 0.49 -0.5
35,522 - EX28DRAFT_0094 0.50 -0.7
35,596 + EX28DRAFT_0094 0.55 +0.3
35,745 - EX28DRAFT_0094 0.65 -0.2
35,746 + EX28DRAFT_0094 0.65 -0.1
35,828 - EX28DRAFT_0094 0.71 +0.1
35,845 + EX28DRAFT_0094 0.72 -0.4
35,845 + EX28DRAFT_0094 0.72 -0.2
35,845 + EX28DRAFT_0094 0.72 -1.3
35,899 + EX28DRAFT_0094 0.76 -0.1
35,899 + EX28DRAFT_0094 0.76 -2.0
35,931 - EX28DRAFT_0094 0.78 -1.0
35,972 + EX28DRAFT_0094 0.81 -0.4
35,972 + EX28DRAFT_0094 0.81 +2.0
35,973 - EX28DRAFT_0094 0.81 -0.5
35,986 + EX28DRAFT_0094 0.82 -0.4
35,986 + EX28DRAFT_0094 0.82 -0.1
36,007 + EX28DRAFT_0094 0.84 -0.7
36,008 - EX28DRAFT_0094 0.84 -1.1
36,168 + -0.1
36,168 + -0.6
36,250 + -0.2
36,251 - +1.5
36,263 + -0.2
36,264 - -0.4
36,398 + EX28DRAFT_0095 0.21 -0.1
36,398 + EX28DRAFT_0095 0.21 +0.5
36,399 - EX28DRAFT_0095 0.21 -1.4
36,399 - EX28DRAFT_0095 0.21 -0.8
36,666 + EX28DRAFT_0095 0.57 -0.6
36,666 + EX28DRAFT_0095 0.57 -0.4
36,666 + EX28DRAFT_0095 0.57 -0.8
36,666 + EX28DRAFT_0095 0.57 -0.2
36,666 + EX28DRAFT_0095 0.57 +0.1
36,801 - EX28DRAFT_0095 0.76 -0.9
36,801 - EX28DRAFT_0095 0.76 -0.6
36,826 + EX28DRAFT_0095 0.79 -0.3
36,826 + EX28DRAFT_0095 0.79 -0.3
36,831 - EX28DRAFT_0095 0.80 -0.3
36,831 - EX28DRAFT_0095 0.80 -0.1
37,023 - -0.7
37,309 + EX28DRAFT_0096 0.26 -0.8
37,309 + EX28DRAFT_0096 0.26 +0.1
37,310 - EX28DRAFT_0096 0.26 -0.6
37,312 - EX28DRAFT_0096 0.26 -0.5
37,312 - EX28DRAFT_0096 0.26 -0.4
37,849 + EX28DRAFT_0096 0.66 +0.7

Or see this region's nucleotide sequence