Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0042

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0040 and EX28DRAFT_0041 are separated by 25 nucleotidesEX28DRAFT_0041 and EX28DRAFT_0042 are separated by 112 nucleotidesEX28DRAFT_0042 and EX28DRAFT_0043 overlap by 29 nucleotidesEX28DRAFT_0043 and EX28DRAFT_0044 are separated by 26 nucleotides EX28DRAFT_0040: EX28DRAFT_0040 - methionyl-tRNA formyltransferase, at 20,391 to 21,338 _0040 EX28DRAFT_0041: EX28DRAFT_0041 - peptide deformylase, at 21,364 to 21,873 _0041 EX28DRAFT_0042: EX28DRAFT_0042 - DNA protecting protein DprA, at 21,986 to 23,125 _0042 EX28DRAFT_0043: EX28DRAFT_0043 - Uncharacterized protein conserved in bacteria, at 23,097 to 23,570 _0043 EX28DRAFT_0044: EX28DRAFT_0044 - Zn-finger domain associated with topoisomerase type I, at 23,597 to 24,151 _0044 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.398 kb on - strandat 21.904 kb on - strandat 21.910 kb on - strandat 21.919 kb on - strandat 21.924 kb on - strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.033 kb on - strandat 22.033 kb on - strandat 22.059 kb on + strandat 22.060 kb on - strandat 22.060 kb on - strandat 22.060 kb on - strandat 22.288 kb on - strand, within EX28DRAFT_0042at 22.291 kb on + strand, within EX28DRAFT_0042at 22.315 kb on + strand, within EX28DRAFT_0042at 22.315 kb on + strand, within EX28DRAFT_0042at 22.318 kb on + strand, within EX28DRAFT_0042at 22.318 kb on + strand, within EX28DRAFT_0042at 22.665 kb on + strand, within EX28DRAFT_0042at 22.761 kb on + strand, within EX28DRAFT_0042at 22.765 kb on + strand, within EX28DRAFT_0042at 22.766 kb on - strand, within EX28DRAFT_0042at 22.827 kb on + strand, within EX28DRAFT_0042at 22.853 kb on + strand, within EX28DRAFT_0042at 22.853 kb on + strand, within EX28DRAFT_0042at 22.950 kb on + strand, within EX28DRAFT_0042at 22.951 kb on - strand, within EX28DRAFT_0042at 22.962 kb on + strand, within EX28DRAFT_0042at 22.962 kb on + strand, within EX28DRAFT_0042at 23.041 kb on - strandat 23.107 kb on + strandat 23.108 kb on - strandat 23.108 kb on - strandat 23.115 kb on + strandat 23.115 kb on + strandat 23.116 kb on - strandat 23.130 kb on + strandat 23.130 kb on + strandat 23.130 kb on + strandat 23.131 kb on - strandat 23.217 kb on + strand, within EX28DRAFT_0043at 23.218 kb on - strand, within EX28DRAFT_0043at 23.314 kb on - strand, within EX28DRAFT_0043at 23.558 kb on + strandat 23.558 kb on + strandat 23.559 kb on - strandat 23.559 kb on - strandat 23.569 kb on - strandat 23.569 kb on - strandat 23.596 kb on + strandat 23.614 kb on - strandat 23.723 kb on + strand, within EX28DRAFT_0044at 23.723 kb on + strand, within EX28DRAFT_0044at 23.724 kb on - strand, within EX28DRAFT_0044at 23.724 kb on - strand, within EX28DRAFT_0044at 23.758 kb on + strand, within EX28DRAFT_0044at 23.759 kb on - strand, within EX28DRAFT_0044at 23.808 kb on + strand, within EX28DRAFT_0044at 23.872 kb on + strand, within EX28DRAFT_0044at 23.872 kb on + strand, within EX28DRAFT_0044at 23.873 kb on - strand, within EX28DRAFT_0044at 23.873 kb on - strand, within EX28DRAFT_0044at 23.940 kb on + strand, within EX28DRAFT_0044at 23.963 kb on - strand, within EX28DRAFT_0044at 23.963 kb on - strand, within EX28DRAFT_0044at 24.058 kb on - strand, within EX28DRAFT_0044at 24.063 kb on + strand, within EX28DRAFT_0044at 24.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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21,398 - +0.4
21,904 - +1.0
21,910 - +0.3
21,919 - +0.3
21,924 - +1.9
22,032 + +0.2
22,032 + +1.2
22,033 - +0.6
22,033 - +0.4
22,059 + -0.1
22,060 - +0.1
22,060 - +0.6
22,060 - +0.4
22,288 - EX28DRAFT_0042 0.26 +0.0
22,291 + EX28DRAFT_0042 0.27 +0.3
22,315 + EX28DRAFT_0042 0.29 +0.8
22,315 + EX28DRAFT_0042 0.29 +2.2
22,318 + EX28DRAFT_0042 0.29 -0.1
22,318 + EX28DRAFT_0042 0.29 +1.3
22,665 + EX28DRAFT_0042 0.60 +0.2
22,761 + EX28DRAFT_0042 0.68 +1.8
22,765 + EX28DRAFT_0042 0.68 +0.6
22,766 - EX28DRAFT_0042 0.68 +0.6
22,827 + EX28DRAFT_0042 0.74 +0.0
22,853 + EX28DRAFT_0042 0.76 +0.9
22,853 + EX28DRAFT_0042 0.76 -0.2
22,950 + EX28DRAFT_0042 0.85 +0.3
22,951 - EX28DRAFT_0042 0.85 +0.0
22,962 + EX28DRAFT_0042 0.86 +0.3
22,962 + EX28DRAFT_0042 0.86 +0.8
23,041 - +0.1
23,107 + +0.2
23,108 - -0.4
23,108 - -0.3
23,115 + +0.2
23,115 + +1.9
23,116 - -0.3
23,130 + +0.4
23,130 + -0.9
23,130 + -0.5
23,131 - -0.9
23,217 + EX28DRAFT_0043 0.25 +2.2
23,218 - EX28DRAFT_0043 0.26 -0.0
23,314 - EX28DRAFT_0043 0.46 -0.4
23,558 + +0.5
23,558 + -0.0
23,559 - +0.7
23,559 - +0.3
23,569 - +0.1
23,569 - +0.5
23,596 + -0.1
23,614 - +0.4
23,723 + EX28DRAFT_0044 0.23 +0.9
23,723 + EX28DRAFT_0044 0.23 +1.6
23,724 - EX28DRAFT_0044 0.23 +0.6
23,724 - EX28DRAFT_0044 0.23 +0.0
23,758 + EX28DRAFT_0044 0.29 +0.2
23,759 - EX28DRAFT_0044 0.29 -1.4
23,808 + EX28DRAFT_0044 0.38 +0.2
23,872 + EX28DRAFT_0044 0.50 +1.1
23,872 + EX28DRAFT_0044 0.50 +0.4
23,873 - EX28DRAFT_0044 0.50 +0.6
23,873 - EX28DRAFT_0044 0.50 -1.6
23,940 + EX28DRAFT_0044 0.62 +0.2
23,963 - EX28DRAFT_0044 0.66 -1.6
23,963 - EX28DRAFT_0044 0.66 +0.1
24,058 - EX28DRAFT_0044 0.83 +0.4
24,063 + EX28DRAFT_0044 0.84 -0.0
24,107 - -3.5

Or see this region's nucleotide sequence