Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30820 and ABIE40_RS30825 overlap by 4 nucleotides ABIE40_RS30825 and ABIE40_RS30830 overlap by 1 nucleotides ABIE40_RS30830 and ABIE40_RS30835 overlap by 4 nucleotides ABIE40_RS30835 and ABIE40_RS30840 are separated by 298 nucleotides
ABIE40_RS30820: ABIE40_RS30820 - cytochrome c, at 855,184 to 855,744
_RS30820
ABIE40_RS30825: ABIE40_RS30825 - cytochrome c oxidase subunit II, at 855,741 to 856,724
_RS30825
ABIE40_RS30830: ABIE40_RS30830 - cytochrome c oxidase subunit I, at 856,724 to 858,634
_RS30830
ABIE40_RS30835: ABIE40_RS30835 - cytochrome c oxidase subunit 3, at 858,631 to 859,233
_RS30835
ABIE40_RS30840: ABIE40_RS30840 - cytochrome c oxidase assembly protein, at 859,532 to 860,419
_RS30840
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.120 kb on - strand, within ABIE40_RS30825 at 856.120 kb on - strand, within ABIE40_RS30825 at 856.239 kb on - strand, within ABIE40_RS30825 at 856.704 kb on + strand at 856.707 kb on - strand at 856.707 kb on - strand at 856.868 kb on + strand at 856.868 kb on + strand at 856.869 kb on - strand at 857.115 kb on - strand, within ABIE40_RS30830 at 857.195 kb on + strand, within ABIE40_RS30830 at 857.219 kb on + strand, within ABIE40_RS30830 at 857.220 kb on - strand, within ABIE40_RS30830 at 857.314 kb on - strand, within ABIE40_RS30830 at 857.469 kb on - strand, within ABIE40_RS30830 at 857.500 kb on - strand, within ABIE40_RS30830 at 857.500 kb on - strand, within ABIE40_RS30830 at 857.540 kb on + strand, within ABIE40_RS30830 at 857.540 kb on + strand, within ABIE40_RS30830 at 857.540 kb on + strand, within ABIE40_RS30830 at 857.541 kb on - strand, within ABIE40_RS30830 at 857.541 kb on - strand, within ABIE40_RS30830 at 857.541 kb on - strand, within ABIE40_RS30830 at 857.542 kb on + strand, within ABIE40_RS30830 at 857.542 kb on + strand, within ABIE40_RS30830 at 857.543 kb on - strand, within ABIE40_RS30830 at 857.615 kb on + strand, within ABIE40_RS30830 at 857.832 kb on + strand, within ABIE40_RS30830 at 857.832 kb on + strand, within ABIE40_RS30830 at 857.832 kb on - strand, within ABIE40_RS30830 at 857.833 kb on - strand, within ABIE40_RS30830 at 857.915 kb on - strand, within ABIE40_RS30830 at 857.915 kb on - strand, within ABIE40_RS30830 at 857.918 kb on + strand, within ABIE40_RS30830 at 857.918 kb on + strand, within ABIE40_RS30830 at 857.918 kb on + strand, within ABIE40_RS30830 at 857.919 kb on - strand, within ABIE40_RS30830 at 857.919 kb on - strand, within ABIE40_RS30830 at 857.919 kb on - strand, within ABIE40_RS30830 at 857.919 kb on - strand, within ABIE40_RS30830 at 857.943 kb on - strand, within ABIE40_RS30830 at 857.986 kb on - strand, within ABIE40_RS30830 at 857.986 kb on - strand, within ABIE40_RS30830 at 857.987 kb on + strand, within ABIE40_RS30830 at 857.987 kb on + strand, within ABIE40_RS30830 at 857.988 kb on - strand, within ABIE40_RS30830 at 857.988 kb on - strand, within ABIE40_RS30830 at 857.991 kb on - strand, within ABIE40_RS30830 at 858.094 kb on + strand, within ABIE40_RS30830 at 858.094 kb on + strand, within ABIE40_RS30830 at 858.095 kb on - strand, within ABIE40_RS30830 at 858.095 kb on - strand, within ABIE40_RS30830 at 858.128 kb on + strand, within ABIE40_RS30830 at 858.129 kb on - strand, within ABIE40_RS30830 at 858.129 kb on - strand, within ABIE40_RS30830 at 858.129 kb on - strand, within ABIE40_RS30830 at 858.134 kb on + strand, within ABIE40_RS30830 at 858.134 kb on + strand, within ABIE40_RS30830 at 858.134 kb on + strand, within ABIE40_RS30830 at 858.135 kb on - strand, within ABIE40_RS30830 at 858.135 kb on - strand, within ABIE40_RS30830 at 858.135 kb on - strand, within ABIE40_RS30830 at 858.164 kb on - strand, within ABIE40_RS30830 at 858.164 kb on - strand, within ABIE40_RS30830 at 858.334 kb on + strand, within ABIE40_RS30830 at 858.335 kb on - strand, within ABIE40_RS30830 at 858.335 kb on - strand, within ABIE40_RS30830 at 858.507 kb on + strand at 858.720 kb on + strand, within ABIE40_RS30835 at 858.721 kb on - strand, within ABIE40_RS30835 at 858.764 kb on - strand, within ABIE40_RS30835 at 858.769 kb on + strand, within ABIE40_RS30835 at 858.831 kb on + strand, within ABIE40_RS30835 at 858.867 kb on - strand, within ABIE40_RS30835 at 859.165 kb on + strand, within ABIE40_RS30835 at 859.166 kb on - strand, within ABIE40_RS30835 at 859.201 kb on + strand at 859.202 kb on - strand at 859.254 kb on + strand at 859.254 kb on + strand at 859.255 kb on - strand at 859.271 kb on - strand at 859.357 kb on + strand at 859.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 856,120 - ABIE40_RS30825 0.39 +0.8 856,120 - ABIE40_RS30825 0.39 +2.4 856,239 - ABIE40_RS30825 0.51 -0.9 856,704 + -0.8 856,707 - +0.4 856,707 - -0.2 856,868 + -1.7 856,868 + -0.8 856,869 - +1.0 857,115 - ABIE40_RS30830 0.20 +0.3 857,195 + ABIE40_RS30830 0.25 -1.2 857,219 + ABIE40_RS30830 0.26 +0.0 857,220 - ABIE40_RS30830 0.26 -1.3 857,314 - ABIE40_RS30830 0.31 -1.3 857,469 - ABIE40_RS30830 0.39 +0.2 857,500 - ABIE40_RS30830 0.41 -0.9 857,500 - ABIE40_RS30830 0.41 -0.8 857,540 + ABIE40_RS30830 0.43 -1.7 857,540 + ABIE40_RS30830 0.43 +0.3 857,540 + ABIE40_RS30830 0.43 -0.3 857,541 - ABIE40_RS30830 0.43 +0.6 857,541 - ABIE40_RS30830 0.43 +0.8 857,541 - ABIE40_RS30830 0.43 +0.6 857,542 + ABIE40_RS30830 0.43 -0.5 857,542 + ABIE40_RS30830 0.43 -1.1 857,543 - ABIE40_RS30830 0.43 -0.2 857,615 + ABIE40_RS30830 0.47 +0.4 857,832 + ABIE40_RS30830 0.58 +1.1 857,832 + ABIE40_RS30830 0.58 +1.0 857,832 - ABIE40_RS30830 0.58 +0.2 857,833 - ABIE40_RS30830 0.58 +1.1 857,915 - ABIE40_RS30830 0.62 -1.3 857,915 - ABIE40_RS30830 0.62 +2.0 857,918 + ABIE40_RS30830 0.62 -0.7 857,918 + ABIE40_RS30830 0.62 +0.5 857,918 + ABIE40_RS30830 0.62 +1.4 857,919 - ABIE40_RS30830 0.63 -0.2 857,919 - ABIE40_RS30830 0.63 -0.6 857,919 - ABIE40_RS30830 0.63 -0.1 857,919 - ABIE40_RS30830 0.63 +1.9 857,943 - ABIE40_RS30830 0.64 -0.6 857,986 - ABIE40_RS30830 0.66 -0.8 857,986 - ABIE40_RS30830 0.66 -1.2 857,987 + ABIE40_RS30830 0.66 +0.9 857,987 + ABIE40_RS30830 0.66 +2.1 857,988 - ABIE40_RS30830 0.66 +0.9 857,988 - ABIE40_RS30830 0.66 +0.1 857,991 - ABIE40_RS30830 0.66 -2.2 858,094 + ABIE40_RS30830 0.72 -1.5 858,094 + ABIE40_RS30830 0.72 +0.7 858,095 - ABIE40_RS30830 0.72 +0.1 858,095 - ABIE40_RS30830 0.72 +0.6 858,128 + ABIE40_RS30830 0.73 +0.5 858,129 - ABIE40_RS30830 0.74 +1.3 858,129 - ABIE40_RS30830 0.74 -1.6 858,129 - ABIE40_RS30830 0.74 +0.5 858,134 + ABIE40_RS30830 0.74 -0.1 858,134 + ABIE40_RS30830 0.74 -0.3 858,134 + ABIE40_RS30830 0.74 -0.8 858,135 - ABIE40_RS30830 0.74 +0.2 858,135 - ABIE40_RS30830 0.74 -0.1 858,135 - ABIE40_RS30830 0.74 +0.8 858,164 - ABIE40_RS30830 0.75 -1.5 858,164 - ABIE40_RS30830 0.75 +0.5 858,334 + ABIE40_RS30830 0.84 -0.6 858,335 - ABIE40_RS30830 0.84 -0.2 858,335 - ABIE40_RS30830 0.84 -1.3 858,507 + -0.6 858,720 + ABIE40_RS30835 0.15 +1.1 858,721 - ABIE40_RS30835 0.15 -0.4 858,764 - ABIE40_RS30835 0.22 -1.2 858,769 + ABIE40_RS30835 0.23 -0.6 858,831 + ABIE40_RS30835 0.33 +0.0 858,867 - ABIE40_RS30835 0.39 -0.6 859,165 + ABIE40_RS30835 0.89 +0.1 859,166 - ABIE40_RS30835 0.89 +0.9 859,201 + -0.7 859,202 - +1.3 859,254 + -0.8 859,254 + -0.2 859,255 - +0.0 859,271 - -0.2 859,357 + -1.0 859,502 - -0.5
Or see this region's nucleotide sequence