Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS26515 and ABIE40_RS26520 overlap by 4 nucleotides ABIE40_RS26520 and ABIE40_RS26525 overlap by 8 nucleotides ABIE40_RS26525 and ABIE40_RS26530 overlap by 1 nucleotides
ABIE40_RS26515: ABIE40_RS26515 - allophanate hydrolase, at 17,061 to 18,857
_RS26515
ABIE40_RS26520: ABIE40_RS26520 - cupin domain-containing protein, at 18,854 to 19,207
_RS26520
ABIE40_RS26525: ABIE40_RS26525 - cysteine hydrolase, at 19,200 to 19,868
_RS26525
ABIE40_RS26530: ABIE40_RS26530 - ABC transporter ATP-binding protein, at 19,868 to 21,418
_RS26530
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.857 kb on + strand, within ABIE40_RS26515 at 17.858 kb on - strand, within ABIE40_RS26515 at 17.951 kb on - strand, within ABIE40_RS26515 at 17.970 kb on - strand, within ABIE40_RS26515 at 17.970 kb on - strand, within ABIE40_RS26515 at 17.970 kb on - strand, within ABIE40_RS26515 at 17.970 kb on - strand, within ABIE40_RS26515 at 17.971 kb on + strand, within ABIE40_RS26515 at 17.972 kb on - strand, within ABIE40_RS26515 at 18.143 kb on - strand, within ABIE40_RS26515 at 18.154 kb on + strand, within ABIE40_RS26515 at 18.154 kb on + strand, within ABIE40_RS26515 at 18.572 kb on + strand, within ABIE40_RS26515 at 18.573 kb on - strand, within ABIE40_RS26515 at 18.574 kb on + strand, within ABIE40_RS26515 at 18.574 kb on + strand, within ABIE40_RS26515 at 18.574 kb on + strand, within ABIE40_RS26515 at 18.575 kb on - strand, within ABIE40_RS26515 at 18.575 kb on - strand, within ABIE40_RS26515 at 18.575 kb on - strand, within ABIE40_RS26515 at 18.581 kb on - strand, within ABIE40_RS26515 at 18.624 kb on - strand, within ABIE40_RS26515 at 18.624 kb on - strand, within ABIE40_RS26515 at 18.624 kb on - strand, within ABIE40_RS26515 at 18.627 kb on - strand, within ABIE40_RS26515 at 18.627 kb on - strand, within ABIE40_RS26515 at 18.627 kb on - strand, within ABIE40_RS26515 at 18.627 kb on - strand, within ABIE40_RS26515 at 18.811 kb on + strand at 18.963 kb on + strand, within ABIE40_RS26520 at 18.963 kb on + strand, within ABIE40_RS26520 at 18.963 kb on + strand, within ABIE40_RS26520 at 18.963 kb on + strand, within ABIE40_RS26520 at 18.963 kb on + strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.964 kb on - strand, within ABIE40_RS26520 at 18.978 kb on + strand, within ABIE40_RS26520 at 19.072 kb on - strand, within ABIE40_RS26520 at 19.085 kb on + strand, within ABIE40_RS26520 at 19.086 kb on - strand, within ABIE40_RS26520 at 19.124 kb on + strand, within ABIE40_RS26520 at 19.125 kb on - strand, within ABIE40_RS26520 at 19.125 kb on - strand, within ABIE40_RS26520 at 19.163 kb on - strand, within ABIE40_RS26520 at 19.181 kb on + strand at 19.182 kb on - strand at 19.182 kb on - strand at 19.227 kb on - strand at 19.309 kb on + strand, within ABIE40_RS26525 at 19.309 kb on + strand, within ABIE40_RS26525 at 19.309 kb on + strand, within ABIE40_RS26525 at 19.310 kb on - strand, within ABIE40_RS26525 at 19.310 kb on - strand, within ABIE40_RS26525 at 19.462 kb on + strand, within ABIE40_RS26525 at 19.462 kb on + strand, within ABIE40_RS26525 at 19.462 kb on + strand, within ABIE40_RS26525 at 19.463 kb on - strand, within ABIE40_RS26525 at 19.463 kb on - strand, within ABIE40_RS26525 at 19.463 kb on - strand, within ABIE40_RS26525 at 19.463 kb on - strand, within ABIE40_RS26525 at 19.529 kb on + strand, within ABIE40_RS26525 at 19.529 kb on + strand, within ABIE40_RS26525 at 19.529 kb on + strand, within ABIE40_RS26525 at 19.529 kb on + strand, within ABIE40_RS26525 at 19.530 kb on - strand, within ABIE40_RS26525 at 19.530 kb on - strand, within ABIE40_RS26525 at 19.530 kb on - strand, within ABIE40_RS26525 at 19.698 kb on + strand, within ABIE40_RS26525 at 19.698 kb on + strand, within ABIE40_RS26525 at 19.698 kb on + strand, within ABIE40_RS26525 at 19.699 kb on - strand, within ABIE40_RS26525 at 19.699 kb on - strand, within ABIE40_RS26525 at 19.885 kb on + strand at 19.886 kb on - strand at 19.960 kb on + strand at 19.960 kb on + strand at 19.961 kb on - strand at 19.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 17,857 + ABIE40_RS26515 0.44 +0.3 17,858 - ABIE40_RS26515 0.44 -0.9 17,951 - ABIE40_RS26515 0.50 -2.4 17,970 - ABIE40_RS26515 0.51 +2.0 17,970 - ABIE40_RS26515 0.51 -0.3 17,970 - ABIE40_RS26515 0.51 +0.6 17,970 - ABIE40_RS26515 0.51 -0.9 17,971 + ABIE40_RS26515 0.51 +1.7 17,972 - ABIE40_RS26515 0.51 +0.3 18,143 - ABIE40_RS26515 0.60 +1.8 18,154 + ABIE40_RS26515 0.61 +1.2 18,154 + ABIE40_RS26515 0.61 -0.2 18,572 + ABIE40_RS26515 0.84 -0.7 18,573 - ABIE40_RS26515 0.84 -1.0 18,574 + ABIE40_RS26515 0.84 +0.1 18,574 + ABIE40_RS26515 0.84 -0.0 18,574 + ABIE40_RS26515 0.84 -1.6 18,575 - ABIE40_RS26515 0.84 +1.4 18,575 - ABIE40_RS26515 0.84 -0.4 18,575 - ABIE40_RS26515 0.84 +0.0 18,581 - ABIE40_RS26515 0.85 -0.4 18,624 - ABIE40_RS26515 0.87 +0.5 18,624 - ABIE40_RS26515 0.87 -0.4 18,624 - ABIE40_RS26515 0.87 -0.6 18,627 - ABIE40_RS26515 0.87 +0.8 18,627 - ABIE40_RS26515 0.87 +0.4 18,627 - ABIE40_RS26515 0.87 +0.3 18,627 - ABIE40_RS26515 0.87 -2.6 18,811 + +2.4 18,963 + ABIE40_RS26520 0.31 -0.2 18,963 + ABIE40_RS26520 0.31 -0.8 18,963 + ABIE40_RS26520 0.31 -0.3 18,963 + ABIE40_RS26520 0.31 +0.2 18,963 + ABIE40_RS26520 0.31 -0.3 18,964 - ABIE40_RS26520 0.31 -0.7 18,964 - ABIE40_RS26520 0.31 -0.5 18,964 - ABIE40_RS26520 0.31 +0.9 18,964 - ABIE40_RS26520 0.31 -1.3 18,964 - ABIE40_RS26520 0.31 -0.3 18,964 - ABIE40_RS26520 0.31 +0.1 18,964 - ABIE40_RS26520 0.31 +0.1 18,964 - ABIE40_RS26520 0.31 +1.0 18,978 + ABIE40_RS26520 0.35 -0.9 19,072 - ABIE40_RS26520 0.62 +0.9 19,085 + ABIE40_RS26520 0.65 -0.2 19,086 - ABIE40_RS26520 0.66 +0.8 19,124 + ABIE40_RS26520 0.76 -1.1 19,125 - ABIE40_RS26520 0.77 -2.2 19,125 - ABIE40_RS26520 0.77 +0.1 19,163 - ABIE40_RS26520 0.87 +0.1 19,181 + -0.1 19,182 - +0.1 19,182 - -1.0 19,227 - +0.8 19,309 + ABIE40_RS26525 0.16 +1.4 19,309 + ABIE40_RS26525 0.16 +0.2 19,309 + ABIE40_RS26525 0.16 +0.2 19,310 - ABIE40_RS26525 0.16 +1.4 19,310 - ABIE40_RS26525 0.16 -2.0 19,462 + ABIE40_RS26525 0.39 -0.7 19,462 + ABIE40_RS26525 0.39 +0.8 19,462 + ABIE40_RS26525 0.39 -0.0 19,463 - ABIE40_RS26525 0.39 +0.4 19,463 - ABIE40_RS26525 0.39 -0.3 19,463 - ABIE40_RS26525 0.39 +0.5 19,463 - ABIE40_RS26525 0.39 -1.9 19,529 + ABIE40_RS26525 0.49 -0.6 19,529 + ABIE40_RS26525 0.49 -0.4 19,529 + ABIE40_RS26525 0.49 +1.4 19,529 + ABIE40_RS26525 0.49 -2.0 19,530 - ABIE40_RS26525 0.49 +1.3 19,530 - ABIE40_RS26525 0.49 -0.0 19,530 - ABIE40_RS26525 0.49 -0.3 19,698 + ABIE40_RS26525 0.74 +1.0 19,698 + ABIE40_RS26525 0.74 +1.7 19,698 + ABIE40_RS26525 0.74 -0.6 19,699 - ABIE40_RS26525 0.75 -0.5 19,699 - ABIE40_RS26525 0.75 +1.9 19,885 + +1.2 19,886 - -0.8 19,960 + -0.6 19,960 + -0.7 19,961 - +1.2 19,961 - +1.2
Or see this region's nucleotide sequence