Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21560

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21550 and ABIE40_RS21555 overlap by 8 nucleotidesABIE40_RS21555 and ABIE40_RS21560 are separated by 145 nucleotidesABIE40_RS21560 and ABIE40_RS21565 are separated by 61 nucleotides ABIE40_RS21550: ABIE40_RS21550 - alpha/beta hydrolase, at 430,358 to 431,167 _RS21550 ABIE40_RS21555: ABIE40_RS21555 - carboxymuconolactone decarboxylase family protein, at 431,160 to 431,549 _RS21555 ABIE40_RS21560: ABIE40_RS21560 - transporter substrate-binding domain-containing protein, at 431,695 to 432,528 _RS21560 ABIE40_RS21565: ABIE40_RS21565 - amino acid ABC transporter permease, at 432,590 to 433,564 _RS21565 Position (kb) 431 432 433Strain fitness (log2 ratio) -2 -1 0 1 2 3at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.907 kb on + strand, within ABIE40_RS21550at 430.907 kb on + strand, within ABIE40_RS21550at 430.907 kb on + strand, within ABIE40_RS21550at 430.908 kb on - strand, within ABIE40_RS21550at 430.919 kb on + strand, within ABIE40_RS21550at 431.031 kb on - strand, within ABIE40_RS21550at 431.031 kb on - strand, within ABIE40_RS21550at 431.031 kb on - strand, within ABIE40_RS21550at 431.220 kb on + strand, within ABIE40_RS21555at 431.220 kb on + strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.286 kb on + strand, within ABIE40_RS21555at 431.287 kb on - strand, within ABIE40_RS21555at 431.287 kb on - strand, within ABIE40_RS21555at 431.287 kb on - strand, within ABIE40_RS21555at 431.466 kb on + strand, within ABIE40_RS21555at 431.467 kb on - strand, within ABIE40_RS21555at 431.679 kb on + strandat 431.679 kb on + strandat 432.049 kb on + strand, within ABIE40_RS21560at 432.050 kb on - strand, within ABIE40_RS21560at 432.050 kb on - strand, within ABIE40_RS21560at 432.050 kb on - strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.057 kb on + strand, within ABIE40_RS21560at 432.057 kb on + strand, within ABIE40_RS21560at 432.057 kb on + strand, within ABIE40_RS21560at 432.058 kb on - strand, within ABIE40_RS21560at 432.160 kb on + strand, within ABIE40_RS21560at 432.160 kb on + strand, within ABIE40_RS21560at 432.160 kb on + strand, within ABIE40_RS21560at 432.161 kb on - strand, within ABIE40_RS21560at 432.211 kb on + strand, within ABIE40_RS21560at 432.211 kb on + strand, within ABIE40_RS21560at 432.211 kb on + strand, within ABIE40_RS21560at 432.241 kb on + strand, within ABIE40_RS21560at 432.242 kb on - strand, within ABIE40_RS21560at 432.242 kb on - strand, within ABIE40_RS21560at 432.382 kb on + strand, within ABIE40_RS21560at 432.382 kb on + strand, within ABIE40_RS21560at 432.500 kb on - strandat 432.506 kb on + strandat 432.506 kb on + strandat 432.506 kb on + strandat 432.506 kb on + strandat 432.506 kb on + strandat 432.506 kb on + strandat 432.506 kb on + strandat 432.511 kb on + strandat 432.511 kb on + strandat 432.511 kb on + strandat 432.511 kb on + strandat 432.512 kb on - strandat 432.512 kb on - strandat 432.513 kb on + strandat 432.513 kb on + strandat 432.513 kb on + strandat 432.513 kb on + strandat 432.514 kb on - strandat 432.514 kb on - strandat 432.514 kb on - strandat 432.514 kb on - strandat 432.526 kb on + strandat 432.526 kb on + strandat 432.526 kb on + strandat 432.527 kb on - strandat 432.527 kb on - strandat 432.597 kb on - strandat 432.631 kb on + strandat 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.971 kb on + strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 432.972 kb on - strand, within ABIE40_RS21565at 433.073 kb on + strand, within ABIE40_RS21565at 433.073 kb on + strand, within ABIE40_RS21565at 433.073 kb on + strand, within ABIE40_RS21565at 433.074 kb on - strand, within ABIE40_RS21565at 433.074 kb on - strand, within ABIE40_RS21565at 433.074 kb on - strand, within ABIE40_RS21565at 433.074 kb on - strand, within ABIE40_RS21565at 433.074 kb on - strand, within ABIE40_RS21565at 433.074 kb on - strand, within ABIE40_RS21565at 433.115 kb on + strand, within ABIE40_RS21565at 433.116 kb on - strand, within ABIE40_RS21565at 433.116 kb on - strand, within ABIE40_RS21565at 433.116 kb on - strand, within ABIE40_RS21565at 433.124 kb on + strand, within ABIE40_RS21565at 433.125 kb on - strand, within ABIE40_RS21565at 433.174 kb on + strand, within ABIE40_RS21565at 433.196 kb on + strand, within ABIE40_RS21565at 433.205 kb on + strand, within ABIE40_RS21565at 433.205 kb on + strand, within ABIE40_RS21565at 433.206 kb on - strand, within ABIE40_RS21565at 433.206 kb on - strand, within ABIE40_RS21565at 433.364 kb on + strand, within ABIE40_RS21565at 433.487 kb on + strandat 433.487 kb on + strandat 433.488 kb on - strandat 433.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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430,863 + ABIE40_RS21550 0.62 +1.0
430,863 + ABIE40_RS21550 0.62 +0.2
430,863 + ABIE40_RS21550 0.62 +0.0
430,863 + ABIE40_RS21550 0.62 +0.1
430,863 + ABIE40_RS21550 0.62 -1.5
430,863 + ABIE40_RS21550 0.62 +0.6
430,864 - ABIE40_RS21550 0.62 -0.3
430,864 - ABIE40_RS21550 0.62 -0.2
430,864 - ABIE40_RS21550 0.62 -1.8
430,864 - ABIE40_RS21550 0.62 -0.1
430,864 - ABIE40_RS21550 0.62 +0.2
430,864 - ABIE40_RS21550 0.62 +0.4
430,864 - ABIE40_RS21550 0.62 -0.1
430,907 + ABIE40_RS21550 0.68 +0.8
430,907 + ABIE40_RS21550 0.68 +3.1
430,907 + ABIE40_RS21550 0.68 -0.3
430,908 - ABIE40_RS21550 0.68 -0.6
430,919 + ABIE40_RS21550 0.69 +0.1
431,031 - ABIE40_RS21550 0.83 -0.5
431,031 - ABIE40_RS21550 0.83 -1.6
431,031 - ABIE40_RS21550 0.83 -0.9
431,220 + ABIE40_RS21555 0.15 +0.1
431,220 + ABIE40_RS21555 0.15 -0.2
431,221 - ABIE40_RS21555 0.16 -2.0
431,221 - ABIE40_RS21555 0.16 -1.5
431,221 - ABIE40_RS21555 0.16 +0.1
431,221 - ABIE40_RS21555 0.16 +0.7
431,221 - ABIE40_RS21555 0.16 -2.3
431,286 + ABIE40_RS21555 0.32 +0.2
431,287 - ABIE40_RS21555 0.33 +1.0
431,287 - ABIE40_RS21555 0.33 +0.6
431,287 - ABIE40_RS21555 0.33 -0.5
431,466 + ABIE40_RS21555 0.78 +0.3
431,467 - ABIE40_RS21555 0.79 +0.0
431,679 + -0.0
431,679 + -0.8
432,049 + ABIE40_RS21560 0.42 -1.7
432,050 - ABIE40_RS21560 0.43 -0.0
432,050 - ABIE40_RS21560 0.43 +1.6
432,050 - ABIE40_RS21560 0.43 +0.2
432,052 + ABIE40_RS21560 0.43 +0.6
432,052 + ABIE40_RS21560 0.43 +0.3
432,052 + ABIE40_RS21560 0.43 -2.0
432,052 + ABIE40_RS21560 0.43 -0.1
432,052 + ABIE40_RS21560 0.43 -0.2
432,052 + ABIE40_RS21560 0.43 +0.1
432,053 - ABIE40_RS21560 0.43 +0.9
432,053 - ABIE40_RS21560 0.43 +1.2
432,053 - ABIE40_RS21560 0.43 -0.7
432,053 - ABIE40_RS21560 0.43 +0.2
432,053 - ABIE40_RS21560 0.43 -0.2
432,055 + ABIE40_RS21560 0.43 -2.5
432,055 + ABIE40_RS21560 0.43 +0.6
432,055 + ABIE40_RS21560 0.43 -0.1
432,055 + ABIE40_RS21560 0.43 +1.1
432,055 + ABIE40_RS21560 0.43 +0.5
432,055 + ABIE40_RS21560 0.43 -0.3
432,055 + ABIE40_RS21560 0.43 -0.9
432,055 + ABIE40_RS21560 0.43 -0.1
432,055 + ABIE40_RS21560 0.43 -1.8
432,055 + ABIE40_RS21560 0.43 -0.8
432,055 + ABIE40_RS21560 0.43 -0.6
432,055 + ABIE40_RS21560 0.43 +0.5
432,056 - ABIE40_RS21560 0.43 +1.0
432,056 - ABIE40_RS21560 0.43 -0.5
432,056 - ABIE40_RS21560 0.43 -1.4
432,056 - ABIE40_RS21560 0.43 -0.3
432,056 - ABIE40_RS21560 0.43 +0.5
432,057 + ABIE40_RS21560 0.43 -0.3
432,057 + ABIE40_RS21560 0.43 +0.2
432,057 + ABIE40_RS21560 0.43 -0.2
432,058 - ABIE40_RS21560 0.44 -0.7
432,160 + ABIE40_RS21560 0.56 -0.0
432,160 + ABIE40_RS21560 0.56 -0.7
432,160 + ABIE40_RS21560 0.56 +0.0
432,161 - ABIE40_RS21560 0.56 +0.6
432,211 + ABIE40_RS21560 0.62 +0.9
432,211 + ABIE40_RS21560 0.62 -0.4
432,211 + ABIE40_RS21560 0.62 -1.0
432,241 + ABIE40_RS21560 0.65 -0.0
432,242 - ABIE40_RS21560 0.66 -0.4
432,242 - ABIE40_RS21560 0.66 +0.1
432,382 + ABIE40_RS21560 0.82 -0.8
432,382 + ABIE40_RS21560 0.82 +0.4
432,500 - +0.1
432,506 + -1.2
432,506 + +0.3
432,506 + -1.3
432,506 + -0.1
432,506 + +0.4
432,506 + -0.9
432,506 + -0.3
432,511 + -0.8
432,511 + -1.2
432,511 + -0.1
432,511 + +0.3
432,512 - -0.8
432,512 - -2.0
432,513 + +0.1
432,513 + -0.5
432,513 + -1.3
432,513 + -0.6
432,514 - +3.2
432,514 - +0.4
432,514 - -1.1
432,514 - -0.9
432,526 + +0.0
432,526 + +1.9
432,526 + -0.8
432,527 - +0.5
432,527 - +1.3
432,597 - -0.6
432,631 + -1.4
432,971 + ABIE40_RS21565 0.39 -1.2
432,971 + ABIE40_RS21565 0.39 +2.2
432,971 + ABIE40_RS21565 0.39 +0.0
432,971 + ABIE40_RS21565 0.39 -0.5
432,971 + ABIE40_RS21565 0.39 -0.0
432,971 + ABIE40_RS21565 0.39 +0.2
432,971 + ABIE40_RS21565 0.39 -0.1
432,971 + ABIE40_RS21565 0.39 -0.2
432,971 + ABIE40_RS21565 0.39 -0.4
432,971 + ABIE40_RS21565 0.39 +0.4
432,972 - ABIE40_RS21565 0.39 +0.9
432,972 - ABIE40_RS21565 0.39 +0.3
432,972 - ABIE40_RS21565 0.39 -0.2
432,972 - ABIE40_RS21565 0.39 +0.0
432,972 - ABIE40_RS21565 0.39 -0.4
432,972 - ABIE40_RS21565 0.39 +0.4
432,972 - ABIE40_RS21565 0.39 -0.9
432,972 - ABIE40_RS21565 0.39 -0.8
433,073 + ABIE40_RS21565 0.50 -0.2
433,073 + ABIE40_RS21565 0.50 +0.3
433,073 + ABIE40_RS21565 0.50 +0.1
433,074 - ABIE40_RS21565 0.50 +0.4
433,074 - ABIE40_RS21565 0.50 +0.3
433,074 - ABIE40_RS21565 0.50 -0.8
433,074 - ABIE40_RS21565 0.50 -0.5
433,074 - ABIE40_RS21565 0.50 -0.8
433,074 - ABIE40_RS21565 0.50 +2.2
433,115 + ABIE40_RS21565 0.54 -0.6
433,116 - ABIE40_RS21565 0.54 +0.6
433,116 - ABIE40_RS21565 0.54 -0.3
433,116 - ABIE40_RS21565 0.54 -0.7
433,124 + ABIE40_RS21565 0.55 -0.5
433,125 - ABIE40_RS21565 0.55 -0.7
433,174 + ABIE40_RS21565 0.60 +1.7
433,196 + ABIE40_RS21565 0.62 +0.9
433,205 + ABIE40_RS21565 0.63 -0.4
433,205 + ABIE40_RS21565 0.63 -1.2
433,206 - ABIE40_RS21565 0.63 -0.4
433,206 - ABIE40_RS21565 0.63 -0.5
433,364 + ABIE40_RS21565 0.79 -1.7
433,487 + -0.2
433,487 + +0.3
433,488 - +0.2
433,488 - +0.1

Or see this region's nucleotide sequence