Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20675 and ABIE40_RS20680 are separated by 177 nucleotides ABIE40_RS20680 and ABIE40_RS20685 are separated by 44 nucleotides ABIE40_RS20685 and ABIE40_RS20690 are separated by 64 nucleotides
ABIE40_RS20675: ABIE40_RS20675 - inositol monophosphatase family protein, at 244,296 to 245,096
_RS20675
ABIE40_RS20680: ABIE40_RS20680 - FadR/GntR family transcriptional regulator, at 245,274 to 245,999
_RS20680
ABIE40_RS20685: ABIE40_RS20685 - ABC transporter substrate-binding protein, at 246,044 to 247,552
_RS20685
ABIE40_RS20690: ABIE40_RS20690 - ABC transporter permease, at 247,617 to 248,564
_RS20690
Position (kb) 246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 245.091 kb on - strand at 245.091 kb on - strand at 245.112 kb on + strand at 245.113 kb on - strand at 245.113 kb on - strand at 245.155 kb on + strand at 245.156 kb on - strand at 245.301 kb on + strand at 245.301 kb on + strand at 245.301 kb on + strand at 245.302 kb on - strand at 245.302 kb on - strand at 245.302 kb on - strand at 245.302 kb on - strand at 245.302 kb on - strand at 245.302 kb on - strand at 245.302 kb on - strand at 245.634 kb on + strand, within ABIE40_RS20680 at 245.634 kb on + strand, within ABIE40_RS20680 at 245.634 kb on + strand, within ABIE40_RS20680 at 245.634 kb on + strand, within ABIE40_RS20680 at 245.634 kb on + strand, within ABIE40_RS20680 at 245.634 kb on + strand, within ABIE40_RS20680 at 245.635 kb on - strand, within ABIE40_RS20680 at 245.635 kb on - strand, within ABIE40_RS20680 at 245.635 kb on - strand, within ABIE40_RS20680 at 245.635 kb on - strand, within ABIE40_RS20680 at 245.635 kb on - strand, within ABIE40_RS20680 at 245.635 kb on - strand, within ABIE40_RS20680 at 245.637 kb on - strand, within ABIE40_RS20680 at 245.655 kb on + strand, within ABIE40_RS20680 at 245.655 kb on + strand, within ABIE40_RS20680 at 245.655 kb on + strand, within ABIE40_RS20680 at 245.656 kb on - strand, within ABIE40_RS20680 at 245.656 kb on - strand, within ABIE40_RS20680 at 245.656 kb on - strand, within ABIE40_RS20680 at 245.656 kb on - strand, within ABIE40_RS20680 at 245.841 kb on + strand, within ABIE40_RS20680 at 245.841 kb on + strand, within ABIE40_RS20680 at 245.841 kb on + strand, within ABIE40_RS20680 at 245.842 kb on - strand, within ABIE40_RS20680 at 245.842 kb on - strand, within ABIE40_RS20680 at 245.842 kb on - strand, within ABIE40_RS20680 at 246.075 kb on + strand at 246.191 kb on + strand at 246.194 kb on - strand at 246.446 kb on + strand, within ABIE40_RS20685 at 246.620 kb on - strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.661 kb on + strand, within ABIE40_RS20685 at 246.662 kb on - strand, within ABIE40_RS20685 at 246.662 kb on - strand, within ABIE40_RS20685 at 246.662 kb on - strand, within ABIE40_RS20685 at 246.662 kb on - strand, within ABIE40_RS20685 at 246.662 kb on - strand, within ABIE40_RS20685 at 246.683 kb on + strand, within ABIE40_RS20685 at 246.827 kb on + strand, within ABIE40_RS20685 at 246.827 kb on + strand, within ABIE40_RS20685 at 246.828 kb on - strand, within ABIE40_RS20685 at 246.839 kb on + strand, within ABIE40_RS20685 at 246.840 kb on - strand, within ABIE40_RS20685 at 246.840 kb on - strand, within ABIE40_RS20685 at 246.950 kb on + strand, within ABIE40_RS20685 at 246.950 kb on + strand, within ABIE40_RS20685 at 246.951 kb on - strand, within ABIE40_RS20685 at 247.229 kb on + strand, within ABIE40_RS20685 at 247.229 kb on + strand, within ABIE40_RS20685 at 247.229 kb on + strand, within ABIE40_RS20685 at 247.230 kb on - strand, within ABIE40_RS20685 at 247.230 kb on - strand, within ABIE40_RS20685 at 247.230 kb on - strand, within ABIE40_RS20685 at 247.325 kb on + strand, within ABIE40_RS20685 at 247.325 kb on + strand, within ABIE40_RS20685 at 247.325 kb on + strand, within ABIE40_RS20685 at 247.325 kb on + strand, within ABIE40_RS20685 at 247.326 kb on - strand, within ABIE40_RS20685 at 247.326 kb on - strand, within ABIE40_RS20685 at 247.445 kb on + strand at 247.445 kb on + strand at 247.445 kb on + strand at 247.446 kb on - strand at 247.446 kb on - strand at 247.446 kb on - strand at 247.446 kb on - strand at 247.456 kb on + strand at 247.457 kb on - strand at 247.557 kb on - strand at 247.557 kb on - strand at 247.557 kb on - strand at 247.620 kb on + strand at 247.620 kb on + strand at 247.620 kb on + strand at 247.620 kb on + strand at 247.620 kb on + strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.621 kb on - strand at 247.626 kb on + strand at 247.626 kb on + strand at 247.626 kb on + strand at 247.627 kb on - strand at 247.627 kb on - strand at 247.627 kb on - strand at 247.627 kb on - strand at 247.627 kb on - strand at 247.627 kb on - strand at 247.673 kb on - strand at 247.673 kb on - strand at 247.765 kb on - strand, within ABIE40_RS20690 at 247.780 kb on - strand, within ABIE40_RS20690 at 247.809 kb on + strand, within ABIE40_RS20690 at 247.809 kb on + strand, within ABIE40_RS20690 at 247.809 kb on + strand, within ABIE40_RS20690 at 247.809 kb on + strand, within ABIE40_RS20690 at 247.810 kb on - strand, within ABIE40_RS20690 at 247.810 kb on - strand, within ABIE40_RS20690 at 247.810 kb on - strand, within ABIE40_RS20690 at 247.810 kb on - strand, within ABIE40_RS20690 at 247.810 kb on - strand, within ABIE40_RS20690 at 247.810 kb on - strand, within ABIE40_RS20690 at 247.850 kb on + strand, within ABIE40_RS20690 at 247.850 kb on + strand, within ABIE40_RS20690 at 247.850 kb on + strand, within ABIE40_RS20690 at 247.850 kb on + strand, within ABIE40_RS20690 at 247.851 kb on - strand, within ABIE40_RS20690 at 247.926 kb on + strand, within ABIE40_RS20690 at 247.991 kb on + strand, within ABIE40_RS20690 at 247.991 kb on + strand, within ABIE40_RS20690 at 247.991 kb on + strand, within ABIE40_RS20690 at 247.991 kb on + strand, within ABIE40_RS20690 at 247.991 kb on + strand, within ABIE40_RS20690 at 247.991 kb on + strand, within ABIE40_RS20690 at 247.992 kb on - strand, within ABIE40_RS20690 at 247.992 kb on - strand, within ABIE40_RS20690 at 247.992 kb on - strand, within ABIE40_RS20690 at 248.004 kb on + strand, within ABIE40_RS20690 at 248.004 kb on + strand, within ABIE40_RS20690 at 248.250 kb on + strand, within ABIE40_RS20690 at 248.250 kb on + strand, within ABIE40_RS20690 at 248.251 kb on - strand, within ABIE40_RS20690 at 248.251 kb on - strand, within ABIE40_RS20690 at 248.251 kb on - strand, within ABIE40_RS20690 at 248.251 kb on - strand, within ABIE40_RS20690 at 248.251 kb on - strand, within ABIE40_RS20690 at 248.452 kb on - strand, within ABIE40_RS20690 at 248.452 kb on - strand, within ABIE40_RS20690
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 245,091 - -0.4 245,091 - +0.3 245,112 + -0.6 245,113 - -0.9 245,113 - +0.3 245,155 + -0.2 245,156 - -0.3 245,301 + +2.2 245,301 + -0.1 245,301 + -0.4 245,302 - -0.7 245,302 - +0.1 245,302 - +0.1 245,302 - +0.0 245,302 - -2.2 245,302 - -0.5 245,302 - +0.3 245,634 + ABIE40_RS20680 0.50 -0.7 245,634 + ABIE40_RS20680 0.50 -0.7 245,634 + ABIE40_RS20680 0.50 +0.1 245,634 + ABIE40_RS20680 0.50 +0.4 245,634 + ABIE40_RS20680 0.50 +1.6 245,634 + ABIE40_RS20680 0.50 +0.2 245,635 - ABIE40_RS20680 0.50 -0.5 245,635 - ABIE40_RS20680 0.50 -0.5 245,635 - ABIE40_RS20680 0.50 +0.8 245,635 - ABIE40_RS20680 0.50 -0.1 245,635 - ABIE40_RS20680 0.50 -0.4 245,635 - ABIE40_RS20680 0.50 -1.2 245,637 - ABIE40_RS20680 0.50 +0.4 245,655 + ABIE40_RS20680 0.52 -0.5 245,655 + ABIE40_RS20680 0.52 -0.1 245,655 + ABIE40_RS20680 0.52 -0.2 245,656 - ABIE40_RS20680 0.53 +0.5 245,656 - ABIE40_RS20680 0.53 +1.3 245,656 - ABIE40_RS20680 0.53 -2.3 245,656 - ABIE40_RS20680 0.53 +1.4 245,841 + ABIE40_RS20680 0.78 -2.1 245,841 + ABIE40_RS20680 0.78 -0.7 245,841 + ABIE40_RS20680 0.78 -0.4 245,842 - ABIE40_RS20680 0.78 +0.5 245,842 - ABIE40_RS20680 0.78 -0.5 245,842 - ABIE40_RS20680 0.78 -0.4 246,075 + +0.3 246,191 + -0.2 246,194 - -0.3 246,446 + ABIE40_RS20685 0.27 -1.7 246,620 - ABIE40_RS20685 0.38 -1.5 246,661 + ABIE40_RS20685 0.41 +0.3 246,661 + ABIE40_RS20685 0.41 -0.7 246,661 + ABIE40_RS20685 0.41 +0.0 246,661 + ABIE40_RS20685 0.41 -1.8 246,661 + ABIE40_RS20685 0.41 -0.4 246,661 + ABIE40_RS20685 0.41 -0.2 246,661 + ABIE40_RS20685 0.41 +0.5 246,662 - ABIE40_RS20685 0.41 +1.4 246,662 - ABIE40_RS20685 0.41 -1.4 246,662 - ABIE40_RS20685 0.41 +0.2 246,662 - ABIE40_RS20685 0.41 -1.2 246,662 - ABIE40_RS20685 0.41 -0.1 246,683 + ABIE40_RS20685 0.42 -0.7 246,827 + ABIE40_RS20685 0.52 +0.8 246,827 + ABIE40_RS20685 0.52 +2.2 246,828 - ABIE40_RS20685 0.52 -0.3 246,839 + ABIE40_RS20685 0.53 +0.3 246,840 - ABIE40_RS20685 0.53 -0.2 246,840 - ABIE40_RS20685 0.53 -0.0 246,950 + ABIE40_RS20685 0.60 +1.5 246,950 + ABIE40_RS20685 0.60 -0.5 246,951 - ABIE40_RS20685 0.60 +1.7 247,229 + ABIE40_RS20685 0.79 +0.1 247,229 + ABIE40_RS20685 0.79 -2.2 247,229 + ABIE40_RS20685 0.79 -0.8 247,230 - ABIE40_RS20685 0.79 -2.2 247,230 - ABIE40_RS20685 0.79 +0.6 247,230 - ABIE40_RS20685 0.79 +0.0 247,325 + ABIE40_RS20685 0.85 -1.1 247,325 + ABIE40_RS20685 0.85 +0.4 247,325 + ABIE40_RS20685 0.85 -0.6 247,325 + ABIE40_RS20685 0.85 -0.3 247,326 - ABIE40_RS20685 0.85 +0.0 247,326 - ABIE40_RS20685 0.85 +0.0 247,445 + -0.2 247,445 + +0.3 247,445 + +0.3 247,446 - +0.1 247,446 - -0.1 247,446 - +0.8 247,446 - +0.0 247,456 + +2.2 247,457 - +0.6 247,557 - -0.3 247,557 - -0.5 247,557 - +1.2 247,620 + +0.6 247,620 + -1.1 247,620 + -0.6 247,620 + +0.0 247,620 + -0.5 247,621 - -1.0 247,621 - +0.6 247,621 - -0.5 247,621 - +0.1 247,621 - +0.6 247,621 - -1.8 247,621 - +0.2 247,621 - -1.3 247,621 - -2.5 247,621 - -0.8 247,621 - +0.7 247,621 - +0.2 247,621 - +0.7 247,621 - -0.8 247,621 - +0.3 247,621 - -0.4 247,621 - -0.1 247,621 - +0.5 247,621 - +0.9 247,626 + -0.1 247,626 + +0.6 247,626 + +1.4 247,627 - -0.0 247,627 - -0.3 247,627 - +0.1 247,627 - -0.9 247,627 - -0.8 247,627 - +0.2 247,673 - +0.0 247,673 - -0.8 247,765 - ABIE40_RS20690 0.16 -0.8 247,780 - ABIE40_RS20690 0.17 +0.3 247,809 + ABIE40_RS20690 0.20 +0.0 247,809 + ABIE40_RS20690 0.20 -0.8 247,809 + ABIE40_RS20690 0.20 -0.2 247,809 + ABIE40_RS20690 0.20 -1.1 247,810 - ABIE40_RS20690 0.20 +0.2 247,810 - ABIE40_RS20690 0.20 +0.4 247,810 - ABIE40_RS20690 0.20 +0.9 247,810 - ABIE40_RS20690 0.20 -0.4 247,810 - ABIE40_RS20690 0.20 +0.8 247,810 - ABIE40_RS20690 0.20 +0.1 247,850 + ABIE40_RS20690 0.25 -0.1 247,850 + ABIE40_RS20690 0.25 -1.6 247,850 + ABIE40_RS20690 0.25 +0.0 247,850 + ABIE40_RS20690 0.25 -0.5 247,851 - ABIE40_RS20690 0.25 -0.0 247,926 + ABIE40_RS20690 0.33 +0.2 247,991 + ABIE40_RS20690 0.39 +0.3 247,991 + ABIE40_RS20690 0.39 +0.2 247,991 + ABIE40_RS20690 0.39 -2.3 247,991 + ABIE40_RS20690 0.39 +2.2 247,991 + ABIE40_RS20690 0.39 +0.1 247,991 + ABIE40_RS20690 0.39 -0.1 247,992 - ABIE40_RS20690 0.40 +0.1 247,992 - ABIE40_RS20690 0.40 -0.7 247,992 - ABIE40_RS20690 0.40 +2.2 248,004 + ABIE40_RS20690 0.41 +0.2 248,004 + ABIE40_RS20690 0.41 -0.2 248,250 + ABIE40_RS20690 0.67 +3.1 248,250 + ABIE40_RS20690 0.67 +1.3 248,251 - ABIE40_RS20690 0.67 -0.5 248,251 - ABIE40_RS20690 0.67 -0.4 248,251 - ABIE40_RS20690 0.67 +0.7 248,251 - ABIE40_RS20690 0.67 +0.3 248,251 - ABIE40_RS20690 0.67 -1.5 248,452 - ABIE40_RS20690 0.88 +1.1 248,452 - ABIE40_RS20690 0.88 -0.1
Or see this region's nucleotide sequence