Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS17850

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,569,867	+		ABIE40_RS17845	0.66	-0.1
3,569,867	+		ABIE40_RS17845	0.66	-0.6
3,569,867	+		ABIE40_RS17845	0.66	-0.7
3,569,868	-		ABIE40_RS17845	0.66	-0.2
3,569,868	-		ABIE40_RS17845	0.66	+0.3
3,569,868	-		ABIE40_RS17845	0.66	-0.2
3,569,905	+		ABIE40_RS17845	0.67	-0.3
3,569,905	+		ABIE40_RS17845	0.67	+2.3
3,569,961	-		ABIE40_RS17845	0.69	+1.1
3,570,080	+		ABIE40_RS17845	0.73	+0.2
3,570,332	+		ABIE40_RS17845	0.82	-1.7
3,570,332	+		ABIE40_RS17845	0.82	-0.0
3,570,333	-		ABIE40_RS17845	0.82	-0.6
3,570,333	-		ABIE40_RS17845	0.82	-0.4
3,570,333	-		ABIE40_RS17845	0.82	-0.2
3,570,336	+		ABIE40_RS17845	0.82	-0.5
3,570,336	+		ABIE40_RS17845	0.82	-0.2
3,570,337	-		ABIE40_RS17845	0.82	-0.2
3,570,337	-		ABIE40_RS17845	0.82	-0.7
3,570,337	-		ABIE40_RS17845	0.82	-0.6
3,570,337	-		ABIE40_RS17845	0.82	+0.9
3,570,337	-		ABIE40_RS17845	0.82	+1.4
3,570,337	-		ABIE40_RS17845	0.82	-0.9
3,570,341	+		ABIE40_RS17845	0.82	-1.0
3,570,342	-		ABIE40_RS17845	0.82	+0.9
3,570,422	+		ABIE40_RS17845	0.85	-2.0
3,570,422	+		ABIE40_RS17845	0.85	-0.2
3,570,423	-		ABIE40_RS17845	0.85	+0.6
3,570,423	-		ABIE40_RS17845	0.85	+0.7
3,570,428	+		ABIE40_RS17845	0.85	-0.7
3,570,462	+		ABIE40_RS17845	0.87	+0.7
3,570,462	+		ABIE40_RS17845	0.87	+0.3
3,570,463	-		ABIE40_RS17845	0.87	+0.2
3,570,525	+		ABIE40_RS17845	0.89	-1.4
3,570,525	+		ABIE40_RS17845	0.89	+0.7
3,570,525	+		ABIE40_RS17845	0.89	+0.9
3,570,525	+		ABIE40_RS17845	0.89	+0.3
3,570,525	+		ABIE40_RS17845	0.89	+0.1
3,570,526	-		ABIE40_RS17845	0.89	+0.5
3,570,526	-		ABIE40_RS17845	0.89	+0.2
3,570,526	-		ABIE40_RS17845	0.89	-0.8
3,570,526	-		ABIE40_RS17845	0.89	+0.5
3,570,527	+		ABIE40_RS17845	0.89	+0.4
3,570,527	+		ABIE40_RS17845	0.89	-0.1
3,570,527	+		ABIE40_RS17845	0.89	+1.8
3,570,527	+		ABIE40_RS17845	0.89	-0.3
3,570,527	+		ABIE40_RS17845	0.89	-0.2
3,570,527	+		ABIE40_RS17845	0.89	-1.5
3,570,527	+		ABIE40_RS17845	0.89	-1.2
3,570,527	+		ABIE40_RS17845	0.89	-0.1
3,570,527	+		ABIE40_RS17845	0.89	+0.2
3,570,527	+		ABIE40_RS17845	0.89	+0.5
3,570,527	+		ABIE40_RS17845	0.89	+2.4
3,570,527	+		ABIE40_RS17845	0.89	-0.3
3,570,527	+		ABIE40_RS17845	0.89	+0.0
3,570,528	-		ABIE40_RS17845	0.89	-3.3
3,570,528	-		ABIE40_RS17845	0.89	-0.5
3,570,528	-		ABIE40_RS17845	0.89	+3.2
3,570,528	-		ABIE40_RS17845	0.89	-0.4
3,570,528	-		ABIE40_RS17845	0.89	+0.2
3,570,528	-		ABIE40_RS17845	0.89	-0.0
3,570,528	-		ABIE40_RS17845	0.89	+0.4
3,570,528	-		ABIE40_RS17845	0.89	-0.6
3,570,528	-		ABIE40_RS17845	0.89	+0.3
3,570,528	-		ABIE40_RS17845	0.89	+0.5
3,570,528	-		ABIE40_RS17845	0.89	-0.9
3,570,528	-		ABIE40_RS17845	0.89	-0.2
3,570,528	-		ABIE40_RS17845	0.89	+0.9
3,570,528	-		ABIE40_RS17845	0.89	-0.2
3,570,528	-		ABIE40_RS17845	0.89	-0.3
3,570,528	-		ABIE40_RS17845	0.89	-0.2
3,570,577	-				-0.1
3,570,684	+				+1.8
3,570,685	-				-0.1
3,570,685	-				-0.9
3,570,850	-				+1.2
3,570,850	-				+0.1
3,570,851	+				-0.1
3,570,866	+				+0.4
3,570,867	-				+0.4
3,570,869	+				+2.2
3,570,869	+				-1.0
3,570,869	+				+0.3
3,570,869	+				+0.0
3,570,869	+				-1.4
3,570,870	-				-0.0
3,570,870	-				-0.2
3,570,870	-				+0.6
3,570,870	-				+1.0
3,570,976	+		ABIE40_RS17850	0.52	+0.6
3,570,976	+		ABIE40_RS17850	0.52	+0.8
3,570,977	-		ABIE40_RS17850	0.52	+0.6
3,571,033	+		ABIE40_RS17850	0.74	+0.7
3,571,033	+		ABIE40_RS17850	0.74	+0.7
3,571,033	+		ABIE40_RS17850	0.74	+0.6
3,571,033	+		ABIE40_RS17850	0.74	+1.1
3,571,033	+		ABIE40_RS17850	0.74	-0.9
3,571,034	-		ABIE40_RS17850	0.75	+0.8
3,571,034	-		ABIE40_RS17850	0.75	+2.8
3,571,034	-		ABIE40_RS17850	0.75	-0.2
3,571,034	-		ABIE40_RS17850	0.75	+1.0
3,571,034	-		ABIE40_RS17850	0.75	+0.3
3,571,034	-		ABIE40_RS17850	0.75	-0.0
3,571,034	-		ABIE40_RS17850	0.75	-0.8
3,571,034	-		ABIE40_RS17850	0.75	-0.2
3,571,070	-		ABIE40_RS17850	0.89	-0.2
3,571,092	-				+0.1
3,571,099	+				+0.2
3,571,099	+				-0.0
3,571,100	-				-0.5
3,571,100	-				+0.1
3,571,100	-				+0.5
3,571,100	-				+0.4
3,571,100	-				+0.2
3,571,232	+				-1.9
3,571,233	-				+0.0
3,571,453	+		ABIE40_RS17855	0.23	+0.8
3,571,454	-		ABIE40_RS17855	0.23	-0.1
3,571,467	-		ABIE40_RS17855	0.24	+0.6
3,571,489	+		ABIE40_RS17855	0.25	+2.6
3,571,489	+		ABIE40_RS17855	0.25	+0.1
3,571,490	-		ABIE40_RS17855	0.25	+1.4
3,571,490	-		ABIE40_RS17855	0.25	+1.6
3,571,490	-		ABIE40_RS17855	0.25	+1.9
3,571,490	-		ABIE40_RS17855	0.25	-1.6
3,571,601	-		ABIE40_RS17855	0.32	-0.8
3,571,601	-		ABIE40_RS17855	0.32	+0.1
3,571,601	-		ABIE40_RS17855	0.32	-0.2
3,571,601	-		ABIE40_RS17855	0.32	-0.3
3,571,601	-		ABIE40_RS17855	0.32	+0.6
3,571,601	-		ABIE40_RS17855	0.32	+0.6
3,571,678	+		ABIE40_RS17855	0.37	-0.2
3,571,678	+		ABIE40_RS17855	0.37	-1.0
3,571,678	+		ABIE40_RS17855	0.37	+0.6
3,571,678	+		ABIE40_RS17855	0.37	-0.2
3,571,679	-		ABIE40_RS17855	0.37	-0.4
3,571,852	+		ABIE40_RS17855	0.48	-1.2
3,571,852	+		ABIE40_RS17855	0.48	+0.9
3,571,852	+		ABIE40_RS17855	0.48	+0.8
3,571,852	+		ABIE40_RS17855	0.48	-0.9
3,571,852	+		ABIE40_RS17855	0.48	+0.5
3,571,853	-		ABIE40_RS17855	0.48	-0.7
3,571,853	-		ABIE40_RS17855	0.48	-0.3
3,571,879	-		ABIE40_RS17855	0.50	+0.0
3,571,991	+		ABIE40_RS17855	0.57	+0.3
3,571,991	+		ABIE40_RS17855	0.57	-0.9
3,571,991	+		ABIE40_RS17855	0.57	+1.9
3,571,992	-		ABIE40_RS17855	0.57	+0.0
3,571,992	-		ABIE40_RS17855	0.57	+1.2
3,571,993	+		ABIE40_RS17855	0.57	-0.4
3,571,993	+		ABIE40_RS17855	0.57	+1.3
3,571,993	+		ABIE40_RS17855	0.57	-0.1
3,572,093	+		ABIE40_RS17855	0.64	-0.2
3,572,093	+		ABIE40_RS17855	0.64	-0.2
3,572,093	+		ABIE40_RS17855	0.64	+0.3
3,572,093	+		ABIE40_RS17855	0.64	-0.2
3,572,093	+		ABIE40_RS17855	0.64	+0.3
3,572,094	-		ABIE40_RS17855	0.64	+0.7
3,572,094	-		ABIE40_RS17855	0.64	-0.2