Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16480

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,276,874	+		ABIE40_RS16475	0.63	-1.5
3,276,874	+		ABIE40_RS16475	0.63	-1.2
3,276,875	-		ABIE40_RS16475	0.63	-0.3
3,276,875	-		ABIE40_RS16475	0.63	-0.2
3,276,972	+		ABIE40_RS16475	0.67	+0.1
3,276,972	+		ABIE40_RS16475	0.67	-2.6
3,276,973	-		ABIE40_RS16475	0.67	+0.6
3,276,973	-		ABIE40_RS16475	0.67	+0.7
3,277,025	+		ABIE40_RS16475	0.69	-1.4
3,277,025	+		ABIE40_RS16475	0.69	-0.9
3,277,025	+		ABIE40_RS16475	0.69	-0.8
3,277,025	+		ABIE40_RS16475	0.69	-0.5
3,277,025	+		ABIE40_RS16475	0.69	+0.1
3,277,026	-		ABIE40_RS16475	0.69	+1.7
3,277,026	-		ABIE40_RS16475	0.69	+1.2
3,277,026	-		ABIE40_RS16475	0.69	-0.7
3,277,067	+		ABIE40_RS16475	0.70	-1.1
3,277,067	+		ABIE40_RS16475	0.70	+0.0
3,277,113	+		ABIE40_RS16475	0.72	-0.8
3,277,114	-		ABIE40_RS16475	0.72	-0.4
3,277,145	+		ABIE40_RS16475	0.74	-0.4
3,277,145	+		ABIE40_RS16475	0.74	-0.4
3,277,146	-		ABIE40_RS16475	0.74	-0.2
3,277,146	-		ABIE40_RS16475	0.74	-2.1
3,277,146	-		ABIE40_RS16475	0.74	-1.1
3,277,146	-		ABIE40_RS16475	0.74	-0.2
3,277,216	-		ABIE40_RS16475	0.76	+1.7
3,277,250	+		ABIE40_RS16475	0.78	-0.2
3,277,250	+		ABIE40_RS16475	0.78	-0.9
3,277,250	+		ABIE40_RS16475	0.78	-0.7
3,277,251	-		ABIE40_RS16475	0.78	-0.2
3,277,251	-		ABIE40_RS16475	0.78	+0.0
3,277,251	-		ABIE40_RS16475	0.78	-0.4
3,277,605	-				-0.0
3,277,605	-				+0.6
3,277,646	+				-1.2
3,277,647	-				+0.0
3,277,647	-				-3.4
3,277,647	-				+0.4
3,277,766	+				-0.9
3,277,820	+				-0.4
3,277,820	+				-0.3
3,277,821	-				+0.2
3,277,924	+				+0.1
3,277,924	+				-0.3
3,277,924	+				-0.5
3,277,924	+				-0.8
3,277,925	-				-1.4
3,277,925	-				-0.8
3,277,925	-				+0.3
3,277,925	-				-0.7
3,277,925	-				+0.9
3,277,925	-				-0.1
3,278,068	+		ABIE40_RS16480	0.12	-0.9
3,278,113	+		ABIE40_RS16480	0.15	+0.1
3,278,113	+		ABIE40_RS16480	0.15	+0.7
3,278,113	+		ABIE40_RS16480	0.15	+0.2
3,278,114	-		ABIE40_RS16480	0.15	+0.1
3,278,149	+		ABIE40_RS16480	0.16	+1.3
3,278,150	-		ABIE40_RS16480	0.16	-0.4
3,278,150	-		ABIE40_RS16480	0.16	-1.9
3,278,150	-		ABIE40_RS16480	0.16	-0.7
3,278,152	+		ABIE40_RS16480	0.16	-0.2
3,278,152	+		ABIE40_RS16480	0.16	-0.4
3,278,152	+		ABIE40_RS16480	0.16	-0.6
3,278,152	+		ABIE40_RS16480	0.16	-0.7
3,278,152	+		ABIE40_RS16480	0.16	-1.1
3,278,152	+		ABIE40_RS16480	0.16	-0.5
3,278,153	-		ABIE40_RS16480	0.16	-0.3
3,278,153	-		ABIE40_RS16480	0.16	+0.6
3,278,153	-		ABIE40_RS16480	0.16	-2.5
3,278,153	-		ABIE40_RS16480	0.16	-0.5
3,278,153	-		ABIE40_RS16480	0.16	+0.1
3,278,380	+		ABIE40_RS16480	0.27	-1.2
3,278,381	-		ABIE40_RS16480	0.27	-1.5
3,278,381	-		ABIE40_RS16480	0.27	-0.4
3,278,381	-		ABIE40_RS16480	0.27	-0.2
3,278,569	+		ABIE40_RS16480	0.35	-0.5
3,278,569	+		ABIE40_RS16480	0.35	-1.1
3,278,570	-		ABIE40_RS16480	0.35	-1.2
3,278,640	+		ABIE40_RS16480	0.38	+0.1
3,278,640	+		ABIE40_RS16480	0.38	-0.9
3,278,640	+		ABIE40_RS16480	0.38	-0.6
3,278,640	+		ABIE40_RS16480	0.38	+0.3
3,278,641	-		ABIE40_RS16480	0.38	-1.2
3,278,653	+		ABIE40_RS16480	0.39	-1.1
3,278,654	-		ABIE40_RS16480	0.39	-0.8
3,278,654	-		ABIE40_RS16480	0.39	-0.6
3,278,710	+		ABIE40_RS16480	0.42	-0.8
3,278,710	+		ABIE40_RS16480	0.42	-0.6
3,278,710	+		ABIE40_RS16480	0.42	-0.8
3,278,711	-		ABIE40_RS16480	0.42	-0.4
3,278,729	-		ABIE40_RS16480	0.42	-0.9
3,278,808	+		ABIE40_RS16480	0.46	-0.2
3,278,808	+		ABIE40_RS16480	0.46	+1.5
3,278,809	-		ABIE40_RS16480	0.46	-0.4
3,278,809	-		ABIE40_RS16480	0.46	+1.1
3,278,954	-		ABIE40_RS16480	0.53	-0.2
3,278,954	-		ABIE40_RS16480	0.53	+0.5
3,278,954	-		ABIE40_RS16480	0.53	-0.8
3,278,983	+		ABIE40_RS16480	0.54	-1.4
3,278,983	+		ABIE40_RS16480	0.54	-0.6
3,278,983	+		ABIE40_RS16480	0.54	-0.5
3,278,983	+		ABIE40_RS16480	0.54	-0.2
3,278,983	+		ABIE40_RS16480	0.54	-1.6
3,278,984	-		ABIE40_RS16480	0.54	-1.1
3,278,984	-		ABIE40_RS16480	0.54	+0.5
3,279,005	-		ABIE40_RS16480	0.55	+0.2
3,279,005	-		ABIE40_RS16480	0.55	+0.7
3,279,064	+		ABIE40_RS16480	0.58	-1.1
3,279,064	+		ABIE40_RS16480	0.58	-1.8
3,279,065	-		ABIE40_RS16480	0.58	-0.7
3,279,073	+		ABIE40_RS16480	0.58	-0.9
3,279,074	-		ABIE40_RS16480	0.58	+0.4
3,279,169	+		ABIE40_RS16480	0.62	-2.6
3,279,304	+		ABIE40_RS16480	0.68	+0.1
3,279,304	+		ABIE40_RS16480	0.68	-0.6
3,279,305	-		ABIE40_RS16480	0.69	-1.4
3,279,305	-		ABIE40_RS16480	0.69	-0.3
3,279,305	-		ABIE40_RS16480	0.69	+0.2
3,279,305	-		ABIE40_RS16480	0.69	-0.7
3,279,305	-		ABIE40_RS16480	0.69	+0.1
3,279,367	+		ABIE40_RS16480	0.71	+0.1
3,279,368	-		ABIE40_RS16480	0.71	-0.7
3,279,368	-		ABIE40_RS16480	0.71	+0.0
3,279,368	-		ABIE40_RS16480	0.71	-0.1
3,279,487	+		ABIE40_RS16480	0.77	-0.9
3,279,487	+		ABIE40_RS16480	0.77	+1.4
3,279,488	-		ABIE40_RS16480	0.77	-0.4
3,279,490	+		ABIE40_RS16480	0.77	+0.1
3,279,490	+		ABIE40_RS16480	0.77	+0.3
3,279,491	-		ABIE40_RS16480	0.77	+0.2
3,279,491	-		ABIE40_RS16480	0.77	+0.1
3,279,508	+		ABIE40_RS16480	0.78	-0.2
3,279,653	-		ABIE40_RS16480	0.84	-0.2
3,279,653	-		ABIE40_RS16480	0.84	-1.6
3,279,653	-		ABIE40_RS16480	0.84	-1.1
3,279,818	-				-0.6
3,279,818	-				-2.4
3,279,877	-				-0.6
3,279,881	-				-1.9
3,279,881	-				-2.0
3,279,881	-				+0.5
3,279,881	-				+0.5
3,279,881	-				+0.3
3,279,881	-				-1.9
3,280,016	+				+0.4
3,280,016	+				-0.7
3,280,016	+				+0.0
3,280,016	+				-0.1
3,280,016	+				+0.1
3,280,016	+				-0.1
3,280,017	-				-0.4
3,280,017	-				-0.5
3,280,017	-				-0.6
3,280,017	-				-0.7
3,280,021	+				+0.3
3,280,021	+				+0.1
3,280,021	+				-0.4
3,280,022	-				-0.7
3,280,022	-				-0.9
3,280,022	-				+0.4
3,280,022	-				-0.9
3,280,022	-				-0.1
3,280,026	+				-0.3
3,280,026	+				-2.5
3,280,026	+				-1.6
3,280,027	-				-0.5
3,280,027	-				-0.5
3,280,067	+				-0.4
3,280,067	+				-0.8
3,280,067	+				-1.0
3,280,068	-				+0.9
3,280,068	-				+0.0
3,280,068	-				-0.5
3,280,137	-				-0.9
3,280,137	-				-0.1
3,280,223	+		ABIE40_RS16485	0.16	+0.1
3,280,223	+		ABIE40_RS16485	0.16	-1.0
3,280,224	-		ABIE40_RS16485	0.16	-0.6
3,280,224	-		ABIE40_RS16485	0.16	+0.9
3,280,340	+		ABIE40_RS16485	0.25	-0.0
3,280,340	+		ABIE40_RS16485	0.25	-0.4
3,280,340	+		ABIE40_RS16485	0.25	+0.1
3,280,364	+		ABIE40_RS16485	0.27	+1.0
3,280,365	-		ABIE40_RS16485	0.27	-0.7
3,280,403	+		ABIE40_RS16485	0.30	+0.3
3,280,403	+		ABIE40_RS16485	0.30	+1.4
3,280,403	+		ABIE40_RS16485	0.30	+0.4
3,280,403	+		ABIE40_RS16485	0.30	+0.1
3,280,404	-		ABIE40_RS16485	0.30	+0.1
3,280,404	-		ABIE40_RS16485	0.30	-0.1
3,280,404	-		ABIE40_RS16485	0.30	-0.6
3,280,404	-		ABIE40_RS16485	0.30	-0.1
3,280,404	-		ABIE40_RS16485	0.30	-0.7
3,280,404	-		ABIE40_RS16485	0.30	+0.4
3,280,433	+		ABIE40_RS16485	0.33	+1.4
3,280,433	+		ABIE40_RS16485	0.33	-1.1
3,280,445	+		ABIE40_RS16485	0.33	+1.3
3,280,446	-		ABIE40_RS16485	0.34	+0.2
3,280,451	+		ABIE40_RS16485	0.34	-0.0
3,280,451	+		ABIE40_RS16485	0.34	+0.0
3,280,451	+		ABIE40_RS16485	0.34	-0.3
3,280,451	+		ABIE40_RS16485	0.34	+0.9
3,280,451	+		ABIE40_RS16485	0.34	+1.0
3,280,451	+		ABIE40_RS16485	0.34	-0.8
3,280,451	+		ABIE40_RS16485	0.34	-0.6
3,280,451	+		ABIE40_RS16485	0.34	+0.8
3,280,452	-		ABIE40_RS16485	0.34	-0.4
3,280,452	-		ABIE40_RS16485	0.34	-0.0
3,280,452	-		ABIE40_RS16485	0.34	+0.1
3,280,452	-		ABIE40_RS16485	0.34	+0.4
3,280,452	-		ABIE40_RS16485	0.34	-1.2
3,280,492	+		ABIE40_RS16485	0.37	+0.1
3,280,646	+		ABIE40_RS16485	0.49	-0.3
3,280,646	+		ABIE40_RS16485	0.49	-0.8
3,280,646	+		ABIE40_RS16485	0.49	+1.0
3,280,646	+		ABIE40_RS16485	0.49	+0.0
3,280,646	+		ABIE40_RS16485	0.49	+0.8
3,280,646	+		ABIE40_RS16485	0.49	-0.5
3,280,646	+		ABIE40_RS16485	0.49	-0.6
3,280,646	+		ABIE40_RS16485	0.49	+0.6
3,280,646	+		ABIE40_RS16485	0.49	+1.0
3,280,646	+		ABIE40_RS16485	0.49	+0.5
3,280,647	-		ABIE40_RS16485	0.49	+0.2
3,280,647	-		ABIE40_RS16485	0.49	+0.8
3,280,647	-		ABIE40_RS16485	0.49	+0.2
3,280,647	-		ABIE40_RS16485	0.49	-0.4
3,280,647	-		ABIE40_RS16485	0.49	+0.8
3,280,647	-		ABIE40_RS16485	0.49	-0.6
3,280,647	-		ABIE40_RS16485	0.49	-0.2
3,280,647	-		ABIE40_RS16485	0.49	+0.6
3,280,647	-		ABIE40_RS16485	0.49	-0.1
3,280,647	-		ABIE40_RS16485	0.49	-1.0
3,280,647	-		ABIE40_RS16485	0.49	-2.1
3,280,647	-		ABIE40_RS16485	0.49	-0.2
3,280,647	-		ABIE40_RS16485	0.49	-0.4
3,280,647	-		ABIE40_RS16485	0.49	+0.2
3,280,647	-		ABIE40_RS16485	0.49	+1.8
3,280,647	-		ABIE40_RS16485	0.49	-0.3
3,280,647	-		ABIE40_RS16485	0.49	-1.0
3,280,647	-		ABIE40_RS16485	0.49	-1.3
3,280,647	-		ABIE40_RS16485	0.49	-1.3
3,280,647	-		ABIE40_RS16485	0.49	+0.3
3,280,739	+		ABIE40_RS16485	0.57	-0.5
3,280,739	+		ABIE40_RS16485	0.57	-0.8
3,280,739	+		ABIE40_RS16485	0.57	+1.0
3,280,739	+		ABIE40_RS16485	0.57	+0.6
3,280,739	+		ABIE40_RS16485	0.57	+0.4
3,280,740	-		ABIE40_RS16485	0.57	+0.6
3,280,740	-		ABIE40_RS16485	0.57	-0.4
3,280,740	-		ABIE40_RS16485	0.57	-0.4
3,280,741	+		ABIE40_RS16485	0.57	+0.2
3,280,741	+		ABIE40_RS16485	0.57	-0.9
3,280,741	+		ABIE40_RS16485	0.57	+0.0
3,280,741	+		ABIE40_RS16485	0.57	-0.8
3,280,742	-		ABIE40_RS16485	0.57	-0.3
3,280,742	-		ABIE40_RS16485	0.57	+0.3
3,280,818	-		ABIE40_RS16485	0.63	-0.2
3,280,894	+		ABIE40_RS16485	0.69	+0.8
3,280,894	+		ABIE40_RS16485	0.69	-1.9
3,280,895	-		ABIE40_RS16485	0.69	-1.5
3,280,898	+		ABIE40_RS16485	0.69	-0.4
3,280,898	+		ABIE40_RS16485	0.69	-0.6
3,280,899	-		ABIE40_RS16485	0.69	-0.2
3,280,899	-		ABIE40_RS16485	0.69	-0.3
3,280,899	-		ABIE40_RS16485	0.69	+0.8
3,280,899	-		ABIE40_RS16485	0.69	-0.2
3,280,925	+		ABIE40_RS16485	0.71	-2.2
3,280,926	-		ABIE40_RS16485	0.72	-0.6
3,280,926	-		ABIE40_RS16485	0.72	+1.3
3,280,926	-		ABIE40_RS16485	0.72	-0.4