Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01625 and ABIE40_RS01630 are separated by 9 nucleotides ABIE40_RS01630 and ABIE40_RS01635 are separated by 9 nucleotides ABIE40_RS01635 and ABIE40_RS01640 overlap by 4 nucleotides ABIE40_RS01640 and ABIE40_RS01645 are separated by 180 nucleotides
ABIE40_RS01625: ABIE40_RS01625 - radical SAM family heme chaperone HemW, at 321,753 to 322,955
_RS01625
ABIE40_RS01630: ABIE40_RS01630 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 322,965 to 323,609
_RS01630
ABIE40_RS01635: ABIE40_RS01635 - VOC family protein, at 323,619 to 324,035
_RS01635
ABIE40_RS01640: ABIE40_RS01640 - ribonuclease PH, at 324,032 to 324,751
_RS01640
ABIE40_RS01645: ABIE40_RS01645 - heat-inducible transcriptional repressor HrcA, at 324,932 to 326,023
_RS01645
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 322.967 kb on - strand at 322.967 kb on - strand at 322.967 kb on - strand at 323.090 kb on - strand, within ABIE40_RS01630 at 323.090 kb on - strand, within ABIE40_RS01630 at 323.187 kb on - strand, within ABIE40_RS01630 at 323.343 kb on - strand, within ABIE40_RS01630 at 323.345 kb on - strand, within ABIE40_RS01630 at 323.345 kb on - strand, within ABIE40_RS01630 at 323.345 kb on - strand, within ABIE40_RS01630 at 323.568 kb on - strand at 323.568 kb on - strand at 323.621 kb on - strand at 323.857 kb on - strand, within ABIE40_RS01635 at 323.857 kb on - strand, within ABIE40_RS01635 at 323.934 kb on - strand, within ABIE40_RS01635 at 323.934 kb on - strand, within ABIE40_RS01635 at 323.963 kb on - strand, within ABIE40_RS01635 at 323.963 kb on - strand, within ABIE40_RS01635 at 323.963 kb on - strand, within ABIE40_RS01635 at 323.963 kb on - strand, within ABIE40_RS01635 at 323.963 kb on - strand, within ABIE40_RS01635 at 323.963 kb on - strand, within ABIE40_RS01635 at 323.996 kb on - strand at 323.996 kb on - strand at 324.220 kb on - strand, within ABIE40_RS01640 at 324.340 kb on - strand, within ABIE40_RS01640 at 324.340 kb on - strand, within ABIE40_RS01640 at 324.565 kb on - strand, within ABIE40_RS01640 at 324.565 kb on - strand, within ABIE40_RS01640 at 324.803 kb on - strand at 324.803 kb on - strand at 324.836 kb on - strand at 324.836 kb on - strand at 324.890 kb on + strand at 324.890 kb on + strand at 324.891 kb on - strand at 324.892 kb on + strand at 324.893 kb on - strand at 324.893 kb on - strand at 324.925 kb on - strand at 324.925 kb on - strand at 325.019 kb on + strand at 325.020 kb on - strand at 325.020 kb on - strand at 325.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 322,967 - +0.1 322,967 - +1.3 322,967 - -0.6 323,090 - ABIE40_RS01630 0.19 -0.4 323,090 - ABIE40_RS01630 0.19 -0.6 323,187 - ABIE40_RS01630 0.34 -0.5 323,343 - ABIE40_RS01630 0.59 +0.0 323,345 - ABIE40_RS01630 0.59 +0.5 323,345 - ABIE40_RS01630 0.59 -0.0 323,345 - ABIE40_RS01630 0.59 -0.4 323,568 - +2.5 323,568 - -1.1 323,621 - +1.0 323,857 - ABIE40_RS01635 0.57 -2.2 323,857 - ABIE40_RS01635 0.57 -0.1 323,934 - ABIE40_RS01635 0.76 +0.3 323,934 - ABIE40_RS01635 0.76 +0.0 323,963 - ABIE40_RS01635 0.82 +0.6 323,963 - ABIE40_RS01635 0.82 +0.0 323,963 - ABIE40_RS01635 0.82 -0.7 323,963 - ABIE40_RS01635 0.82 -0.6 323,963 - ABIE40_RS01635 0.82 -0.2 323,963 - ABIE40_RS01635 0.82 -2.8 323,996 - -1.4 323,996 - +0.3 324,220 - ABIE40_RS01640 0.26 +1.6 324,340 - ABIE40_RS01640 0.43 +0.1 324,340 - ABIE40_RS01640 0.43 -1.3 324,565 - ABIE40_RS01640 0.74 +0.4 324,565 - ABIE40_RS01640 0.74 -0.3 324,803 - +1.7 324,803 - -0.4 324,836 - +0.1 324,836 - -1.1 324,890 + +0.1 324,890 + -0.9 324,891 - +0.1 324,892 + +0.1 324,893 - +0.4 324,893 - -0.0 324,925 - -0.1 324,925 - -0.6 325,019 + -0.8 325,020 - -1.5 325,020 - -0.1 325,020 - +0.4
Or see this region's nucleotide sequence