Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28690 and ABID97_RS28695 are separated by 15 nucleotides ABID97_RS28695 and ABID97_RS28700 overlap by 4 nucleotides ABID97_RS28700 and ABID97_RS28705 are separated by 25 nucleotides ABID97_RS28705 and ABID97_RS28710 are separated by 2 nucleotides ABID97_RS28710 and ABID97_RS28715 overlap by 4 nucleotides
ABID97_RS28690: ABID97_RS28690 - hypothetical protein, at 655,729 to 656,067
_RS28690
ABID97_RS28695: ABID97_RS28695 - VOC family protein, at 656,083 to 656,490
_RS28695
ABID97_RS28700: ABID97_RS28700 - AraC family transcriptional regulator, at 656,487 to 656,972
_RS28700
ABID97_RS28705: ABID97_RS28705 - aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 656,998 to 659,208
_RS28705
ABID97_RS28710: ABID97_RS28710 - xanthine dehydrogenase family protein subunit M, at 659,211 to 660,161
_RS28710
ABID97_RS28715: ABID97_RS28715 - aldehyde dehydrogenase iron-sulfur subunit PaoA, at 660,158 to 660,805
_RS28715
Position (kb) 656
657
658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 656.398 kb on - strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.459 kb on + strand at 656.459 kb on + strand at 656.459 kb on + strand at 656.460 kb on - strand at 656.519 kb on + strand at 656.520 kb on - strand at 656.520 kb on - strand at 657.077 kb on + strand at 657.455 kb on + strand, within ABID97_RS28705 at 657.639 kb on - strand, within ABID97_RS28705 at 657.780 kb on - strand, within ABID97_RS28705 at 657.780 kb on - strand, within ABID97_RS28705 at 658.055 kb on - strand, within ABID97_RS28705 at 658.218 kb on - strand, within ABID97_RS28705 at 658.218 kb on - strand, within ABID97_RS28705 at 658.659 kb on - strand, within ABID97_RS28705 at 659.054 kb on + strand at 659.055 kb on - strand at 659.055 kb on - strand at 659.094 kb on - strand at 659.094 kb on - strand at 659.099 kb on + strand at 659.452 kb on + strand, within ABID97_RS28710 at 659.794 kb on + strand, within ABID97_RS28710 at 659.795 kb on - strand, within ABID97_RS28710 at 659.795 kb on - strand, within ABID97_RS28710 at 659.795 kb on - strand, within ABID97_RS28710 at 659.899 kb on + strand, within ABID97_RS28710 at 659.899 kb on + strand, within ABID97_RS28710 at 660.145 kb on + strand at 660.145 kb on + strand at 660.145 kb on + strand at 660.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 656,398 - ABID97_RS28695 0.77 -0.3 656,426 + ABID97_RS28695 0.84 -0.1 656,426 + ABID97_RS28695 0.84 +1.9 656,426 + ABID97_RS28695 0.84 +0.1 656,426 + ABID97_RS28695 0.84 +0.3 656,459 + -0.2 656,459 + +0.4 656,459 + -0.3 656,460 - +0.1 656,519 + -0.5 656,520 - +0.2 656,520 - +0.3 657,077 + -1.1 657,455 + ABID97_RS28705 0.21 -0.7 657,639 - ABID97_RS28705 0.29 -1.5 657,780 - ABID97_RS28705 0.35 -1.0 657,780 - ABID97_RS28705 0.35 -0.3 658,055 - ABID97_RS28705 0.48 -1.1 658,218 - ABID97_RS28705 0.55 +0.7 658,218 - ABID97_RS28705 0.55 -0.7 658,659 - ABID97_RS28705 0.75 -0.6 659,054 + -0.4 659,055 - -1.3 659,055 - -0.4 659,094 - +1.5 659,094 - -1.7 659,099 + -0.2 659,452 + ABID97_RS28710 0.25 -2.6 659,794 + ABID97_RS28710 0.61 -0.7 659,795 - ABID97_RS28710 0.61 -0.9 659,795 - ABID97_RS28710 0.61 -0.2 659,795 - ABID97_RS28710 0.61 -1.7 659,899 + ABID97_RS28710 0.72 -1.0 659,899 + ABID97_RS28710 0.72 -1.1 660,145 + -0.6 660,145 + -0.6 660,145 + -1.3 660,146 - -1.1
Or see this region's nucleotide sequence