Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24285

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24280 and ABID97_RS24285 are separated by 35 nucleotidesABID97_RS24285 and ABID97_RS24290 are separated by 9 nucleotides ABID97_RS24280: ABID97_RS24280 - type II and III secretion system protein family protein, at 5,020,221 to 5,021,591 _RS24280 ABID97_RS24285: ABID97_RS24285 - histidine kinase, at 5,021,627 to 5,022,910 _RS24285 ABID97_RS24290: ABID97_RS24290 - CpaF family protein, at 5,022,920 to 5,024,236 _RS24290 Position (kb) 5021 5022 5023Strain fitness (log2 ratio) -1 0 1at 5021.115 kb on + strand, within ABID97_RS24280at 5021.116 kb on - strand, within ABID97_RS24280at 5021.116 kb on - strand, within ABID97_RS24280at 5021.116 kb on - strand, within ABID97_RS24280at 5021.116 kb on - strand, within ABID97_RS24280at 5021.116 kb on - strand, within ABID97_RS24280at 5021.211 kb on + strand, within ABID97_RS24280at 5021.212 kb on - strand, within ABID97_RS24280at 5021.212 kb on - strand, within ABID97_RS24280at 5021.212 kb on - strand, within ABID97_RS24280at 5021.409 kb on + strand, within ABID97_RS24280at 5021.409 kb on + strand, within ABID97_RS24280at 5021.410 kb on - strand, within ABID97_RS24280at 5021.410 kb on - strand, within ABID97_RS24280at 5021.672 kb on + strandat 5021.672 kb on + strandat 5021.672 kb on + strandat 5021.672 kb on + strandat 5021.673 kb on - strandat 5022.230 kb on + strand, within ABID97_RS24285at 5022.231 kb on - strand, within ABID97_RS24285at 5022.231 kb on - strand, within ABID97_RS24285at 5022.744 kb on + strand, within ABID97_RS24285at 5022.744 kb on + strand, within ABID97_RS24285at 5022.812 kb on + strandat 5022.812 kb on + strandat 5022.812 kb on + strandat 5022.812 kb on + strandat 5022.813 kb on - strandat 5022.813 kb on - strandat 5022.919 kb on + strandat 5022.919 kb on + strandat 5022.919 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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5,021,115 + ABID97_RS24280 0.65 -0.6
5,021,116 - ABID97_RS24280 0.65 +0.9
5,021,116 - ABID97_RS24280 0.65 -1.0
5,021,116 - ABID97_RS24280 0.65 -0.1
5,021,116 - ABID97_RS24280 0.65 -0.9
5,021,116 - ABID97_RS24280 0.65 -0.1
5,021,211 + ABID97_RS24280 0.72 -0.5
5,021,212 - ABID97_RS24280 0.72 -0.5
5,021,212 - ABID97_RS24280 0.72 -0.2
5,021,212 - ABID97_RS24280 0.72 -1.1
5,021,409 + ABID97_RS24280 0.87 -0.8
5,021,409 + ABID97_RS24280 0.87 -0.6
5,021,410 - ABID97_RS24280 0.87 -0.5
5,021,410 - ABID97_RS24280 0.87 +0.5
5,021,672 + -0.2
5,021,672 + -0.4
5,021,672 + -0.8
5,021,672 + +0.4
5,021,673 - -0.2
5,022,230 + ABID97_RS24285 0.47 -0.7
5,022,231 - ABID97_RS24285 0.47 -0.6
5,022,231 - ABID97_RS24285 0.47 -0.7
5,022,744 + ABID97_RS24285 0.87 -0.8
5,022,744 + ABID97_RS24285 0.87 -0.2
5,022,812 + +0.2
5,022,812 + +0.2
5,022,812 + -0.8
5,022,812 + +0.9
5,022,813 - -0.1
5,022,813 - -1.1
5,022,919 + -1.6
5,022,919 + -1.4
5,022,919 + -0.6

Or see this region's nucleotide sequence