Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19140

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19135 and ABID97_RS19140 are separated by 7 nucleotidesABID97_RS19140 and ABID97_RS19145 are separated by 8 nucleotidesABID97_RS19145 and ABID97_RS19150 are separated by 2 nucleotides ABID97_RS19135: ABID97_RS19135 - hypothetical protein, at 3,949,389 to 3,950,717 _RS19135 ABID97_RS19140: ABID97_RS19140 - glycosyltransferase, at 3,950,725 to 3,951,837 _RS19140 ABID97_RS19145: ABID97_RS19145 - hypothetical protein, at 3,951,846 to 3,952,805 _RS19145 ABID97_RS19150: ABID97_RS19150 - hypothetical protein, at 3,952,808 to 3,953,740 _RS19150 Position (kb) 3950 3951 3952Strain fitness (log2 ratio) -1 0 1at 3950.218 kb on - strand, within ABID97_RS19135at 3950.541 kb on + strand, within ABID97_RS19135at 3950.541 kb on + strand, within ABID97_RS19135at 3950.572 kb on - strand, within ABID97_RS19135at 3950.698 kb on - strandat 3950.729 kb on - strandat 3950.734 kb on + strandat 3950.923 kb on + strand, within ABID97_RS19140at 3950.924 kb on - strand, within ABID97_RS19140at 3950.924 kb on - strand, within ABID97_RS19140at 3950.986 kb on + strand, within ABID97_RS19140at 3951.061 kb on + strand, within ABID97_RS19140at 3951.331 kb on + strand, within ABID97_RS19140at 3951.527 kb on - strand, within ABID97_RS19140at 3951.943 kb on - strand, within ABID97_RS19145at 3952.189 kb on - strand, within ABID97_RS19145at 3952.360 kb on - strand, within ABID97_RS19145

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,950,218 - ABID97_RS19135 0.62 +0.1
3,950,541 + ABID97_RS19135 0.87 -1.5
3,950,541 + ABID97_RS19135 0.87 -1.3
3,950,572 - ABID97_RS19135 0.89 +0.1
3,950,698 - +0.9
3,950,729 - -0.3
3,950,734 + +0.4
3,950,923 + ABID97_RS19140 0.18 +0.3
3,950,924 - ABID97_RS19140 0.18 +0.1
3,950,924 - ABID97_RS19140 0.18 +0.7
3,950,986 + ABID97_RS19140 0.23 +0.4
3,951,061 + ABID97_RS19140 0.30 -0.4
3,951,331 + ABID97_RS19140 0.54 +0.2
3,951,527 - ABID97_RS19140 0.72 -0.0
3,951,943 - ABID97_RS19145 0.10 +0.7
3,952,189 - ABID97_RS19145 0.36 +0.9
3,952,360 - ABID97_RS19145 0.54 +0.8

Or see this region's nucleotide sequence