Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18895

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18890 and ABID97_RS18895 are separated by 193 nucleotidesABID97_RS18895 and ABID97_RS18900 are separated by 133 nucleotidesABID97_RS18900 and ABID97_RS18905 are separated by 92 nucleotides ABID97_RS18890: ABID97_RS18890 - LysR family transcriptional regulator, at 3,890,995 to 3,892,230 _RS18890 ABID97_RS18895: ABID97_RS18895 - tannase/feruloyl esterase family alpha/beta hydrolase, at 3,892,424 to 3,894,040 _RS18895 ABID97_RS18900: ABID97_RS18900 - Crp/Fnr family transcriptional regulator, at 3,894,174 to 3,894,896 _RS18900 ABID97_RS18905: ABID97_RS18905 - NAD(P)H-binding protein, at 3,894,989 to 3,895,636 _RS18905 Position (kb) 3892 3893 3894 3895Strain fitness (log2 ratio) -1 0 1at 3892.318 kb on + strandat 3892.378 kb on + strandat 3892.425 kb on + strandat 3892.491 kb on + strandat 3892.492 kb on - strandat 3892.500 kb on + strandat 3892.500 kb on + strandat 3893.094 kb on + strand, within ABID97_RS18895at 3893.193 kb on + strand, within ABID97_RS18895at 3893.379 kb on + strand, within ABID97_RS18895at 3893.380 kb on - strand, within ABID97_RS18895at 3893.380 kb on - strand, within ABID97_RS18895at 3893.606 kb on - strand, within ABID97_RS18895at 3893.677 kb on - strand, within ABID97_RS18895at 3893.704 kb on - strand, within ABID97_RS18895at 3893.722 kb on - strand, within ABID97_RS18895at 3893.982 kb on - strandat 3893.982 kb on - strandat 3894.018 kb on + strandat 3894.117 kb on - strandat 3894.385 kb on + strand, within ABID97_RS18900at 3894.476 kb on - strand, within ABID97_RS18900at 3894.601 kb on + strand, within ABID97_RS18900

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,892,318 + +1.2
3,892,378 + -0.0
3,892,425 + -0.2
3,892,491 + +0.2
3,892,492 - +0.1
3,892,500 + +1.0
3,892,500 + -0.3
3,893,094 + ABID97_RS18895 0.41 -0.6
3,893,193 + ABID97_RS18895 0.48 -0.5
3,893,379 + ABID97_RS18895 0.59 -0.4
3,893,380 - ABID97_RS18895 0.59 -0.0
3,893,380 - ABID97_RS18895 0.59 +0.2
3,893,606 - ABID97_RS18895 0.73 +0.5
3,893,677 - ABID97_RS18895 0.77 -0.3
3,893,704 - ABID97_RS18895 0.79 -0.1
3,893,722 - ABID97_RS18895 0.80 +0.2
3,893,982 - -0.0
3,893,982 - +0.7
3,894,018 + -0.6
3,894,117 - +0.1
3,894,385 + ABID97_RS18900 0.29 +0.1
3,894,476 - ABID97_RS18900 0.42 +0.2
3,894,601 + ABID97_RS18900 0.59 +0.1

Or see this region's nucleotide sequence