Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18890 and ABID97_RS18895 are separated by 193 nucleotides ABID97_RS18895 and ABID97_RS18900 are separated by 133 nucleotides ABID97_RS18900 and ABID97_RS18905 are separated by 92 nucleotides
ABID97_RS18890: ABID97_RS18890 - LysR family transcriptional regulator, at 3,890,995 to 3,892,230
_RS18890
ABID97_RS18895: ABID97_RS18895 - tannase/feruloyl esterase family alpha/beta hydrolase, at 3,892,424 to 3,894,040
_RS18895
ABID97_RS18900: ABID97_RS18900 - Crp/Fnr family transcriptional regulator, at 3,894,174 to 3,894,896
_RS18900
ABID97_RS18905: ABID97_RS18905 - NAD(P)H-binding protein, at 3,894,989 to 3,895,636
_RS18905
Position (kb)
3892
3893
3894
3895 Strain fitness (log2 ratio)
-1
0
1 at 3892.318 kb on + strand at 3892.378 kb on + strand at 3892.425 kb on + strand at 3892.491 kb on + strand at 3892.492 kb on - strand at 3892.500 kb on + strand at 3892.500 kb on + strand at 3893.094 kb on + strand, within ABID97_RS18895 at 3893.193 kb on + strand, within ABID97_RS18895 at 3893.379 kb on + strand, within ABID97_RS18895 at 3893.380 kb on - strand, within ABID97_RS18895 at 3893.380 kb on - strand, within ABID97_RS18895 at 3893.606 kb on - strand, within ABID97_RS18895 at 3893.677 kb on - strand, within ABID97_RS18895 at 3893.704 kb on - strand, within ABID97_RS18895 at 3893.722 kb on - strand, within ABID97_RS18895 at 3893.982 kb on - strand at 3893.982 kb on - strand at 3894.018 kb on + strand at 3894.117 kb on - strand at 3894.385 kb on + strand, within ABID97_RS18900 at 3894.476 kb on - strand, within ABID97_RS18900 at 3894.601 kb on + strand, within ABID97_RS18900
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 3,892,318 + +1.2 3,892,378 + -0.0 3,892,425 + -0.2 3,892,491 + +0.2 3,892,492 - +0.1 3,892,500 + +1.0 3,892,500 + -0.3 3,893,094 + ABID97_RS18895 0.41 -0.6 3,893,193 + ABID97_RS18895 0.48 -0.5 3,893,379 + ABID97_RS18895 0.59 -0.4 3,893,380 - ABID97_RS18895 0.59 -0.0 3,893,380 - ABID97_RS18895 0.59 +0.2 3,893,606 - ABID97_RS18895 0.73 +0.5 3,893,677 - ABID97_RS18895 0.77 -0.3 3,893,704 - ABID97_RS18895 0.79 -0.1 3,893,722 - ABID97_RS18895 0.80 +0.2 3,893,982 - -0.0 3,893,982 - +0.7 3,894,018 + -0.6 3,894,117 - +0.1 3,894,385 + ABID97_RS18900 0.29 +0.1 3,894,476 - ABID97_RS18900 0.42 +0.2 3,894,601 + ABID97_RS18900 0.59 +0.1
Or see this region's nucleotide sequence