Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12925 and ABID97_RS12930 are separated by 219 nucleotides ABID97_RS12930 and ABID97_RS12935 are separated by 38 nucleotides ABID97_RS12935 and ABID97_RS12940 are separated by 37 nucleotides
ABID97_RS12925: ABID97_RS12925 - type VI secretion system contractile sheath large subunit, at 2,678,631 to 2,680,118
_RS12925
ABID97_RS12930: ABID97_RS12930 - Hcp family type VI secretion system effector, at 2,680,338 to 2,680,826
_RS12930
ABID97_RS12935: ABID97_RS12935 - type VI secretion system baseplate subunit TssE, at 2,680,865 to 2,681,281
_RS12935
ABID97_RS12940: ABID97_RS12940 - type VI secretion system baseplate subunit TssF, at 2,681,319 to 2,683,082
_RS12940
Position (kb)
2680
2681
2682 Strain fitness (log2 ratio)
-1
0
1 at 2679.928 kb on - strand, within ABID97_RS12925 at 2680.065 kb on + strand at 2680.066 kb on - strand at 2680.066 kb on - strand at 2680.066 kb on - strand at 2680.333 kb on + strand at 2680.354 kb on - strand at 2680.606 kb on - strand, within ABID97_RS12930 at 2680.639 kb on - strand, within ABID97_RS12930 at 2680.639 kb on - strand, within ABID97_RS12930 at 2680.641 kb on + strand, within ABID97_RS12930 at 2680.642 kb on - strand, within ABID97_RS12930 at 2681.343 kb on + strand at 2681.346 kb on + strand at 2682.000 kb on + strand, within ABID97_RS12940 at 2682.042 kb on + strand, within ABID97_RS12940 at 2682.043 kb on - strand, within ABID97_RS12940
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,679,928 - ABID97_RS12925 0.87 +0.3 2,680,065 + +0.5 2,680,066 - -0.2 2,680,066 - +0.4 2,680,066 - -0.0 2,680,333 + -0.2 2,680,354 - +0.4 2,680,606 - ABID97_RS12930 0.55 +1.0 2,680,639 - ABID97_RS12930 0.62 +0.4 2,680,639 - ABID97_RS12930 0.62 +0.6 2,680,641 + ABID97_RS12930 0.62 -0.0 2,680,642 - ABID97_RS12930 0.62 -0.1 2,681,343 + -0.4 2,681,346 + -0.5 2,682,000 + ABID97_RS12940 0.39 +0.2 2,682,042 + ABID97_RS12940 0.41 +0.3 2,682,043 - ABID97_RS12940 0.41 -0.9
Or see this region's nucleotide sequence