Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12935

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12925 and ABID97_RS12930 are separated by 219 nucleotidesABID97_RS12930 and ABID97_RS12935 are separated by 38 nucleotidesABID97_RS12935 and ABID97_RS12940 are separated by 37 nucleotides ABID97_RS12925: ABID97_RS12925 - type VI secretion system contractile sheath large subunit, at 2,678,631 to 2,680,118 _RS12925 ABID97_RS12930: ABID97_RS12930 - Hcp family type VI secretion system effector, at 2,680,338 to 2,680,826 _RS12930 ABID97_RS12935: ABID97_RS12935 - type VI secretion system baseplate subunit TssE, at 2,680,865 to 2,681,281 _RS12935 ABID97_RS12940: ABID97_RS12940 - type VI secretion system baseplate subunit TssF, at 2,681,319 to 2,683,082 _RS12940 Position (kb) 2680 2681 2682Strain fitness (log2 ratio) -1 0 1at 2679.928 kb on - strand, within ABID97_RS12925at 2680.065 kb on + strandat 2680.066 kb on - strandat 2680.066 kb on - strandat 2680.066 kb on - strandat 2680.333 kb on + strandat 2680.354 kb on - strandat 2680.606 kb on - strand, within ABID97_RS12930at 2680.639 kb on - strand, within ABID97_RS12930at 2680.639 kb on - strand, within ABID97_RS12930at 2680.641 kb on + strand, within ABID97_RS12930at 2680.642 kb on - strand, within ABID97_RS12930at 2681.343 kb on + strandat 2681.346 kb on + strandat 2682.000 kb on + strand, within ABID97_RS12940at 2682.042 kb on + strand, within ABID97_RS12940at 2682.043 kb on - strand, within ABID97_RS12940

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,679,928 - ABID97_RS12925 0.87 +0.3
2,680,065 + +0.5
2,680,066 - -0.2
2,680,066 - +0.4
2,680,066 - -0.0
2,680,333 + -0.2
2,680,354 - +0.4
2,680,606 - ABID97_RS12930 0.55 +1.0
2,680,639 - ABID97_RS12930 0.62 +0.4
2,680,639 - ABID97_RS12930 0.62 +0.6
2,680,641 + ABID97_RS12930 0.62 -0.0
2,680,642 - ABID97_RS12930 0.62 -0.1
2,681,343 + -0.4
2,681,346 + -0.5
2,682,000 + ABID97_RS12940 0.39 +0.2
2,682,042 + ABID97_RS12940 0.41 +0.3
2,682,043 - ABID97_RS12940 0.41 -0.9

Or see this region's nucleotide sequence