Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07590

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07580 and ABID97_RS07585 overlap by 4 nucleotidesABID97_RS07585 and ABID97_RS07590 overlap by 4 nucleotidesABID97_RS07590 and ABID97_RS07595 are separated by 68 nucleotides ABID97_RS07580: ABID97_RS07580 - formate dehydrogenase subunit gamma, at 1,601,135 to 1,602,352 _RS07580 ABID97_RS07585: ABID97_RS07585 - hypothetical protein, at 1,602,349 to 1,602,756 _RS07585 ABID97_RS07590: ABID97_RS07590 - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,602,753 to 1,603,628 _RS07590 ABID97_RS07595: ABID97_RS07595 - FtsX-like permease family protein, at 1,603,697 to 1,606,213 _RS07595 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -1 0 1 2at 1602.069 kb on + strand, within ABID97_RS07580at 1602.069 kb on - strand, within ABID97_RS07580at 1602.069 kb on - strand, within ABID97_RS07580at 1602.070 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.245 kb on + strandat 1602.245 kb on + strandat 1602.505 kb on + strand, within ABID97_RS07585at 1602.506 kb on - strand, within ABID97_RS07585at 1602.506 kb on - strand, within ABID97_RS07585at 1602.506 kb on - strand, within ABID97_RS07585at 1602.891 kb on + strand, within ABID97_RS07590at 1602.891 kb on + strand, within ABID97_RS07590at 1602.892 kb on - strand, within ABID97_RS07590at 1603.194 kb on + strand, within ABID97_RS07590at 1603.194 kb on + strand, within ABID97_RS07590at 1603.195 kb on - strand, within ABID97_RS07590at 1603.195 kb on - strand, within ABID97_RS07590at 1603.195 kb on - strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.407 kb on + strand, within ABID97_RS07590at 1603.407 kb on + strand, within ABID97_RS07590at 1603.408 kb on - strand, within ABID97_RS07590at 1603.570 kb on - strandat 1603.648 kb on + strandat 1603.648 kb on + strandat 1603.649 kb on - strandat 1603.649 kb on - strandat 1603.649 kb on - strandat 1603.727 kb on - strandat 1603.958 kb on + strand, within ABID97_RS07595at 1603.958 kb on + strand, within ABID97_RS07595at 1603.958 kb on + strand, within ABID97_RS07595at 1603.958 kb on + strand, within ABID97_RS07595at 1603.959 kb on - strand, within ABID97_RS07595at 1603.959 kb on - strand, within ABID97_RS07595at 1604.340 kb on - strand, within ABID97_RS07595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,602,069 + ABID97_RS07580 0.77 +0.0
1,602,069 - ABID97_RS07580 0.77 +0.7
1,602,069 - ABID97_RS07580 0.77 +0.4
1,602,070 + ABID97_RS07580 0.77 +0.7
1,602,152 + ABID97_RS07580 0.83 +0.1
1,602,152 + ABID97_RS07580 0.83 +0.2
1,602,152 + ABID97_RS07580 0.83 +0.8
1,602,152 + ABID97_RS07580 0.83 +0.8
1,602,152 + ABID97_RS07580 0.83 +0.1
1,602,152 + ABID97_RS07580 0.83 +0.5
1,602,245 + +0.8
1,602,245 + +0.2
1,602,505 + ABID97_RS07585 0.38 +0.2
1,602,506 - ABID97_RS07585 0.38 +0.2
1,602,506 - ABID97_RS07585 0.38 +0.3
1,602,506 - ABID97_RS07585 0.38 +0.5
1,602,891 + ABID97_RS07590 0.16 +0.2
1,602,891 + ABID97_RS07590 0.16 +0.0
1,602,892 - ABID97_RS07590 0.16 -0.1
1,603,194 + ABID97_RS07590 0.50 -0.4
1,603,194 + ABID97_RS07590 0.50 +0.1
1,603,195 - ABID97_RS07590 0.50 +0.6
1,603,195 - ABID97_RS07590 0.50 -0.0
1,603,195 - ABID97_RS07590 0.50 -0.6
1,603,233 + ABID97_RS07590 0.55 -0.1
1,603,233 + ABID97_RS07590 0.55 +2.2
1,603,233 + ABID97_RS07590 0.55 +2.1
1,603,233 + ABID97_RS07590 0.55 +1.3
1,603,234 - ABID97_RS07590 0.55 +0.1
1,603,234 - ABID97_RS07590 0.55 -0.1
1,603,234 - ABID97_RS07590 0.55 +0.1
1,603,234 - ABID97_RS07590 0.55 +0.0
1,603,234 - ABID97_RS07590 0.55 +0.0
1,603,407 + ABID97_RS07590 0.75 +0.0
1,603,407 + ABID97_RS07590 0.75 -0.0
1,603,408 - ABID97_RS07590 0.75 -0.2
1,603,570 - +0.5
1,603,648 + +0.3
1,603,648 + -0.8
1,603,649 - +0.1
1,603,649 - +0.5
1,603,649 - +0.3
1,603,727 - +0.0
1,603,958 + ABID97_RS07595 0.10 -0.3
1,603,958 + ABID97_RS07595 0.10 +0.5
1,603,958 + ABID97_RS07595 0.10 +0.4
1,603,958 + ABID97_RS07595 0.10 -0.2
1,603,959 - ABID97_RS07595 0.10 -0.2
1,603,959 - ABID97_RS07595 0.10 +0.1
1,604,340 - ABID97_RS07595 0.26 +0.0

Or see this region's nucleotide sequence