Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07060

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07055 and ABID97_RS07060 are separated by 56 nucleotidesABID97_RS07060 and ABID97_RS07065 are separated by 4 nucleotides ABID97_RS07055: ABID97_RS07055 - dipeptide ABC transporter ATP-binding protein, at 1,493,650 to 1,494,678 _RS07055 ABID97_RS07060: ABID97_RS07060 - 4,5-DOPA dioxygenase extradiol, at 1,494,735 to 1,495,667 _RS07060 ABID97_RS07065: ABID97_RS07065 - glucose-6-phosphate dehydrogenase, at 1,495,672 to 1,497,135 _RS07065 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -1 0 1at 1493.893 kb on + strand, within ABID97_RS07055at 1493.893 kb on + strand, within ABID97_RS07055at 1494.008 kb on - strand, within ABID97_RS07055at 1494.329 kb on - strand, within ABID97_RS07055at 1494.329 kb on - strand, within ABID97_RS07055at 1494.391 kb on + strand, within ABID97_RS07055at 1494.391 kb on + strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.454 kb on + strand, within ABID97_RS07055at 1494.457 kb on - strand, within ABID97_RS07055at 1494.676 kb on + strandat 1494.677 kb on - strandat 1495.284 kb on + strand, within ABID97_RS07060at 1495.285 kb on - strand, within ABID97_RS07060at 1495.507 kb on - strand, within ABID97_RS07060at 1495.507 kb on - strand, within ABID97_RS07060at 1495.554 kb on + strand, within ABID97_RS07060at 1495.554 kb on + strand, within ABID97_RS07060at 1495.558 kb on - strand, within ABID97_RS07060at 1495.614 kb on + strandat 1495.615 kb on - strandat 1495.751 kb on + strandat 1495.752 kb on - strandat 1496.072 kb on + strand, within ABID97_RS07065at 1496.150 kb on + strand, within ABID97_RS07065at 1496.150 kb on + strand, within ABID97_RS07065at 1496.151 kb on - strand, within ABID97_RS07065at 1496.151 kb on - strand, within ABID97_RS07065at 1496.151 kb on - strand, within ABID97_RS07065at 1496.288 kb on + strand, within ABID97_RS07065at 1496.288 kb on + strand, within ABID97_RS07065at 1496.288 kb on + strand, within ABID97_RS07065at 1496.288 kb on + strand, within ABID97_RS07065at 1496.289 kb on - strand, within ABID97_RS07065at 1496.474 kb on + strand, within ABID97_RS07065at 1496.475 kb on - strand, within ABID97_RS07065at 1496.619 kb on - strand, within ABID97_RS07065

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,493,893 + ABID97_RS07055 0.24 -0.6
1,493,893 + ABID97_RS07055 0.24 +1.1
1,494,008 - ABID97_RS07055 0.35 -0.2
1,494,329 - ABID97_RS07055 0.66 -0.4
1,494,329 - ABID97_RS07055 0.66 -0.8
1,494,391 + ABID97_RS07055 0.72 +0.6
1,494,391 + ABID97_RS07055 0.72 +0.6
1,494,392 - ABID97_RS07055 0.72 +0.4
1,494,392 - ABID97_RS07055 0.72 -1.0
1,494,392 - ABID97_RS07055 0.72 -0.2
1,494,454 + ABID97_RS07055 0.78 +1.4
1,494,457 - ABID97_RS07055 0.78 -0.1
1,494,676 + -0.1
1,494,677 - -0.3
1,495,284 + ABID97_RS07060 0.59 +0.5
1,495,285 - ABID97_RS07060 0.59 +0.1
1,495,507 - ABID97_RS07060 0.83 +0.4
1,495,507 - ABID97_RS07060 0.83 +0.8
1,495,554 + ABID97_RS07060 0.88 +0.2
1,495,554 + ABID97_RS07060 0.88 +0.2
1,495,558 - ABID97_RS07060 0.88 +0.1
1,495,614 + +0.3
1,495,615 - +1.1
1,495,751 + -0.8
1,495,752 - +0.9
1,496,072 + ABID97_RS07065 0.27 -0.3
1,496,150 + ABID97_RS07065 0.33 -0.4
1,496,150 + ABID97_RS07065 0.33 -1.4
1,496,151 - ABID97_RS07065 0.33 -0.4
1,496,151 - ABID97_RS07065 0.33 +0.0
1,496,151 - ABID97_RS07065 0.33 -0.1
1,496,288 + ABID97_RS07065 0.42 -0.1
1,496,288 + ABID97_RS07065 0.42 +0.5
1,496,288 + ABID97_RS07065 0.42 +0.9
1,496,288 + ABID97_RS07065 0.42 -0.2
1,496,289 - ABID97_RS07065 0.42 -0.3
1,496,474 + ABID97_RS07065 0.55 -0.4
1,496,475 - ABID97_RS07065 0.55 -0.0
1,496,619 - ABID97_RS07065 0.65 -0.4

Or see this region's nucleotide sequence