Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06595

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06585 and ABID97_RS06590 are separated by 110 nucleotidesABID97_RS06590 and ABID97_RS06595 are separated by 1 nucleotidesABID97_RS06595 and ABID97_RS06600 are separated by 36 nucleotidesABID97_RS06600 and ABID97_RS06605 are separated by 6 nucleotides ABID97_RS06585: ABID97_RS06585 - glutathione S-transferase family protein, at 1,393,386 to 1,394,069 _RS06585 ABID97_RS06590: ABID97_RS06590 - MgtC/SapB family protein, at 1,394,180 to 1,394,743 _RS06590 ABID97_RS06595: ABID97_RS06595 - transglycosylase SLT domain-containing protein, at 1,394,745 to 1,396,748 _RS06595 ABID97_RS06600: ABID97_RS06600 - 5-formyltetrahydrofolate cyclo-ligase, at 1,396,785 to 1,397,402 _RS06600 ABID97_RS06605: ABID97_RS06605 - LysR substrate-binding domain-containing protein, at 1,397,409 to 1,398,392 _RS06605 Position (kb) 1394 1395 1396 1397Strain fitness (log2 ratio) -3 -2 -1 0 1at 1393.840 kb on + strand, within ABID97_RS06585at 1393.840 kb on + strand, within ABID97_RS06585at 1394.039 kb on - strandat 1394.039 kb on - strandat 1394.039 kb on - strandat 1394.107 kb on + strandat 1394.107 kb on + strandat 1394.848 kb on + strandat 1394.849 kb on - strandat 1394.849 kb on - strandat 1394.881 kb on + strandat 1394.881 kb on + strandat 1394.980 kb on + strand, within ABID97_RS06595at 1394.981 kb on - strand, within ABID97_RS06595at 1395.037 kb on + strand, within ABID97_RS06595at 1395.038 kb on - strand, within ABID97_RS06595at 1395.223 kb on + strand, within ABID97_RS06595at 1395.224 kb on - strand, within ABID97_RS06595at 1395.224 kb on - strand, within ABID97_RS06595at 1395.430 kb on + strand, within ABID97_RS06595at 1395.431 kb on - strand, within ABID97_RS06595at 1395.478 kb on + strand, within ABID97_RS06595at 1395.478 kb on + strand, within ABID97_RS06595at 1395.478 kb on + strand, within ABID97_RS06595at 1395.478 kb on + strand, within ABID97_RS06595at 1395.479 kb on - strand, within ABID97_RS06595at 1395.479 kb on - strand, within ABID97_RS06595at 1395.598 kb on + strand, within ABID97_RS06595at 1395.599 kb on - strand, within ABID97_RS06595at 1395.694 kb on + strand, within ABID97_RS06595at 1395.694 kb on + strand, within ABID97_RS06595at 1395.695 kb on - strand, within ABID97_RS06595at 1395.695 kb on - strand, within ABID97_RS06595at 1395.695 kb on - strand, within ABID97_RS06595at 1395.695 kb on - strand, within ABID97_RS06595at 1395.695 kb on - strand, within ABID97_RS06595at 1395.845 kb on - strand, within ABID97_RS06595at 1395.845 kb on - strand, within ABID97_RS06595at 1396.259 kb on - strand, within ABID97_RS06595at 1396.259 kb on - strand, within ABID97_RS06595at 1396.333 kb on + strand, within ABID97_RS06595at 1396.334 kb on - strand, within ABID97_RS06595at 1396.334 kb on - strand, within ABID97_RS06595at 1396.453 kb on + strand, within ABID97_RS06595at 1396.453 kb on + strand, within ABID97_RS06595at 1396.454 kb on - strand, within ABID97_RS06595at 1396.785 kb on - strandat 1397.139 kb on + strand, within ABID97_RS06600at 1397.140 kb on - strand, within ABID97_RS06600at 1397.208 kb on + strand, within ABID97_RS06600at 1397.209 kb on - strand, within ABID97_RS06600at 1397.209 kb on - strand, within ABID97_RS06600at 1397.250 kb on + strand, within ABID97_RS06600at 1397.250 kb on + strand, within ABID97_RS06600at 1397.251 kb on - strand, within ABID97_RS06600at 1397.251 kb on - strand, within ABID97_RS06600at 1397.548 kb on + strand, within ABID97_RS06605at 1397.548 kb on + strand, within ABID97_RS06605at 1397.549 kb on - strand, within ABID97_RS06605at 1397.681 kb on - strand, within ABID97_RS06605at 1397.686 kb on + strand, within ABID97_RS06605at 1397.686 kb on + strand, within ABID97_RS06605at 1397.686 kb on + strand, within ABID97_RS06605at 1397.686 kb on + strand, within ABID97_RS06605at 1397.687 kb on - strand, within ABID97_RS06605at 1397.687 kb on - strand, within ABID97_RS06605at 1397.687 kb on - strand, within ABID97_RS06605at 1397.687 kb on - strand, within ABID97_RS06605at 1397.687 kb on - strand, within ABID97_RS06605at 1397.695 kb on + strand, within ABID97_RS06605at 1397.695 kb on + strand, within ABID97_RS06605

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,393,840 + ABID97_RS06585 0.66 +0.2
1,393,840 + ABID97_RS06585 0.66 -0.4
1,394,039 - +1.3
1,394,039 - -0.3
1,394,039 - +0.1
1,394,107 + -0.2
1,394,107 + -0.5
1,394,848 + +0.5
1,394,849 - +0.0
1,394,849 - +0.7
1,394,881 + -0.0
1,394,881 + +0.4
1,394,980 + ABID97_RS06595 0.12 -0.2
1,394,981 - ABID97_RS06595 0.12 +0.4
1,395,037 + ABID97_RS06595 0.15 +0.6
1,395,038 - ABID97_RS06595 0.15 -0.1
1,395,223 + ABID97_RS06595 0.24 -0.4
1,395,224 - ABID97_RS06595 0.24 -0.2
1,395,224 - ABID97_RS06595 0.24 +0.2
1,395,430 + ABID97_RS06595 0.34 +0.3
1,395,431 - ABID97_RS06595 0.34 +0.1
1,395,478 + ABID97_RS06595 0.37 +0.9
1,395,478 + ABID97_RS06595 0.37 -0.3
1,395,478 + ABID97_RS06595 0.37 +0.3
1,395,478 + ABID97_RS06595 0.37 +0.6
1,395,479 - ABID97_RS06595 0.37 -0.2
1,395,479 - ABID97_RS06595 0.37 -0.6
1,395,598 + ABID97_RS06595 0.43 -0.7
1,395,599 - ABID97_RS06595 0.43 +0.3
1,395,694 + ABID97_RS06595 0.47 +0.5
1,395,694 + ABID97_RS06595 0.47 +0.2
1,395,695 - ABID97_RS06595 0.47 +0.3
1,395,695 - ABID97_RS06595 0.47 -1.8
1,395,695 - ABID97_RS06595 0.47 +0.7
1,395,695 - ABID97_RS06595 0.47 -0.1
1,395,695 - ABID97_RS06595 0.47 -0.0
1,395,845 - ABID97_RS06595 0.55 +0.3
1,395,845 - ABID97_RS06595 0.55 +0.4
1,396,259 - ABID97_RS06595 0.76 +0.9
1,396,259 - ABID97_RS06595 0.76 +0.5
1,396,333 + ABID97_RS06595 0.79 +0.9
1,396,334 - ABID97_RS06595 0.79 +0.3
1,396,334 - ABID97_RS06595 0.79 +0.2
1,396,453 + ABID97_RS06595 0.85 +0.8
1,396,453 + ABID97_RS06595 0.85 +0.7
1,396,454 - ABID97_RS06595 0.85 +0.1
1,396,785 - -0.1
1,397,139 + ABID97_RS06600 0.57 -2.8
1,397,140 - ABID97_RS06600 0.57 -0.4
1,397,208 + ABID97_RS06600 0.68 -1.4
1,397,209 - ABID97_RS06600 0.69 -0.7
1,397,209 - ABID97_RS06600 0.69 -0.1
1,397,250 + ABID97_RS06600 0.75 -1.2
1,397,250 + ABID97_RS06600 0.75 -1.5
1,397,251 - ABID97_RS06600 0.75 -1.3
1,397,251 - ABID97_RS06600 0.75 -0.7
1,397,548 + ABID97_RS06605 0.14 -0.4
1,397,548 + ABID97_RS06605 0.14 +0.3
1,397,549 - ABID97_RS06605 0.14 -0.4
1,397,681 - ABID97_RS06605 0.28 +0.5
1,397,686 + ABID97_RS06605 0.28 +0.7
1,397,686 + ABID97_RS06605 0.28 +0.6
1,397,686 + ABID97_RS06605 0.28 -0.1
1,397,686 + ABID97_RS06605 0.28 -0.1
1,397,687 - ABID97_RS06605 0.28 +0.3
1,397,687 - ABID97_RS06605 0.28 +0.6
1,397,687 - ABID97_RS06605 0.28 +0.7
1,397,687 - ABID97_RS06605 0.28 +0.1
1,397,687 - ABID97_RS06605 0.28 -0.1
1,397,695 + ABID97_RS06605 0.29 +0.5
1,397,695 + ABID97_RS06605 0.29 +1.0

Or see this region's nucleotide sequence