Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04215 and ABID97_RS04220 are separated by 18 nucleotides ABID97_RS04220 and ABID97_RS04225 are separated by 112 nucleotides ABID97_RS04225 and ABID97_RS04230 are separated by 11 nucleotides
ABID97_RS04215: ABID97_RS04215 - CaiB/BaiF CoA-transferase family protein, at 868,022 to 869,269
_RS04215
ABID97_RS04220: ABID97_RS04220 - acyl-CoA-binding protein, at 869,288 to 869,545
_RS04220
ABID97_RS04225: ABID97_RS04225 - hypothetical protein, at 869,658 to 870,077
_RS04225
ABID97_RS04230: ABID97_RS04230 - hypothetical protein, at 870,089 to 870,925
_RS04230
Position (kb) 869
870 Strain fitness (log2 ratio) -2
-1
0
1
2 at 868.452 kb on - strand, within ABID97_RS04215 at 868.677 kb on - strand, within ABID97_RS04215 at 868.719 kb on - strand, within ABID97_RS04215 at 868.808 kb on + strand, within ABID97_RS04215 at 868.809 kb on - strand, within ABID97_RS04215 at 868.809 kb on - strand, within ABID97_RS04215 at 868.970 kb on - strand, within ABID97_RS04215 at 869.027 kb on + strand, within ABID97_RS04215 at 869.028 kb on - strand, within ABID97_RS04215 at 869.028 kb on - strand, within ABID97_RS04215 at 869.028 kb on - strand, within ABID97_RS04215 at 869.028 kb on - strand, within ABID97_RS04215 at 869.061 kb on - strand, within ABID97_RS04215 at 869.319 kb on + strand, within ABID97_RS04220 at 869.320 kb on - strand, within ABID97_RS04220 at 869.320 kb on - strand, within ABID97_RS04220 at 869.320 kb on - strand, within ABID97_RS04220 at 869.320 kb on - strand, within ABID97_RS04220 at 869.320 kb on - strand, within ABID97_RS04220 at 869.454 kb on + strand, within ABID97_RS04220 at 869.454 kb on + strand, within ABID97_RS04220 at 869.454 kb on + strand, within ABID97_RS04220 at 869.455 kb on - strand, within ABID97_RS04220 at 869.455 kb on - strand, within ABID97_RS04220 at 869.455 kb on - strand, within ABID97_RS04220 at 869.455 kb on - strand, within ABID97_RS04220 at 869.576 kb on + strand at 869.577 kb on - strand at 869.583 kb on + strand at 869.622 kb on + strand at 869.622 kb on + strand at 869.622 kb on + strand at 869.622 kb on + strand at 869.623 kb on - strand at 869.623 kb on - strand at 869.623 kb on - strand at 869.623 kb on - strand at 869.623 kb on - strand at 869.997 kb on + strand, within ABID97_RS04225 at 869.997 kb on + strand, within ABID97_RS04225 at 869.997 kb on + strand, within ABID97_RS04225 at 869.997 kb on + strand, within ABID97_RS04225 at 869.997 kb on + strand, within ABID97_RS04225 at 869.997 kb on + strand, within ABID97_RS04225 at 869.998 kb on - strand, within ABID97_RS04225 at 869.998 kb on - strand, within ABID97_RS04225 at 870.172 kb on - strand at 870.315 kb on + strand, within ABID97_RS04230 at 870.315 kb on + strand, within ABID97_RS04230 at 870.315 kb on + strand, within ABID97_RS04230 at 870.315 kb on + strand, within ABID97_RS04230 at 870.316 kb on - strand, within ABID97_RS04230 at 870.316 kb on - strand, within ABID97_RS04230 at 870.507 kb on + strand, within ABID97_RS04230 at 870.508 kb on - strand, within ABID97_RS04230 at 870.520 kb on - strand, within ABID97_RS04230
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 868,452 - ABID97_RS04215 0.34 -0.9 868,677 - ABID97_RS04215 0.52 +0.2 868,719 - ABID97_RS04215 0.56 -0.0 868,808 + ABID97_RS04215 0.63 -0.2 868,809 - ABID97_RS04215 0.63 -0.3 868,809 - ABID97_RS04215 0.63 -0.2 868,970 - ABID97_RS04215 0.76 +2.4 869,027 + ABID97_RS04215 0.81 +0.2 869,028 - ABID97_RS04215 0.81 +0.4 869,028 - ABID97_RS04215 0.81 -0.3 869,028 - ABID97_RS04215 0.81 -0.2 869,028 - ABID97_RS04215 0.81 -0.6 869,061 - ABID97_RS04215 0.83 +0.4 869,319 + ABID97_RS04220 0.12 -0.6 869,320 - ABID97_RS04220 0.12 +0.5 869,320 - ABID97_RS04220 0.12 -0.3 869,320 - ABID97_RS04220 0.12 -0.0 869,320 - ABID97_RS04220 0.12 -1.3 869,320 - ABID97_RS04220 0.12 -0.4 869,454 + ABID97_RS04220 0.64 +0.1 869,454 + ABID97_RS04220 0.64 -0.2 869,454 + ABID97_RS04220 0.64 -0.3 869,455 - ABID97_RS04220 0.65 -0.2 869,455 - ABID97_RS04220 0.65 +1.2 869,455 - ABID97_RS04220 0.65 +0.1 869,455 - ABID97_RS04220 0.65 +1.0 869,576 + +0.0 869,577 - -0.4 869,583 + +0.1 869,622 + -2.2 869,622 + +0.5 869,622 + -0.0 869,622 + -0.1 869,623 - -0.6 869,623 - +0.3 869,623 - +0.4 869,623 - -0.2 869,623 - +0.0 869,997 + ABID97_RS04225 0.81 -0.8 869,997 + ABID97_RS04225 0.81 +0.0 869,997 + ABID97_RS04225 0.81 +0.2 869,997 + ABID97_RS04225 0.81 -0.2 869,997 + ABID97_RS04225 0.81 +0.7 869,997 + ABID97_RS04225 0.81 +0.2 869,998 - ABID97_RS04225 0.81 +2.0 869,998 - ABID97_RS04225 0.81 -0.9 870,172 - +0.7 870,315 + ABID97_RS04230 0.27 +0.6 870,315 + ABID97_RS04230 0.27 -0.2 870,315 + ABID97_RS04230 0.27 +0.3 870,315 + ABID97_RS04230 0.27 +1.4 870,316 - ABID97_RS04230 0.27 -0.0 870,316 - ABID97_RS04230 0.27 +0.2 870,507 + ABID97_RS04230 0.50 +1.0 870,508 - ABID97_RS04230 0.50 +0.2 870,520 - ABID97_RS04230 0.51 +0.6
Or see this region's nucleotide sequence