Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04105 and ABID97_RS04110 are separated by 13 nucleotides ABID97_RS04110 and ABID97_RS04115 are separated by 194 nucleotides ABID97_RS04115 and ABID97_RS04120 are separated by 182 nucleotides
ABID97_RS04105: ABID97_RS04105 - tripartite tricarboxylate transporter permease, at 842,797 to 844,308
_RS04105
ABID97_RS04110: ABID97_RS04110 - tripartite tricarboxylate transporter TctB family protein, at 844,322 to 844,810
_RS04110
ABID97_RS04115: ABID97_RS04115 - RNA-binding protein, at 845,005 to 845,418
_RS04115
ABID97_RS04120: ABID97_RS04120 - DUF3820 family protein, at 845,601 to 845,834
_RS04120
Position (kb) 844
845 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 844.104 kb on - strand, within ABID97_RS04105 at 844.107 kb on - strand, within ABID97_RS04105 at 844.107 kb on - strand, within ABID97_RS04105 at 844.107 kb on - strand, within ABID97_RS04105 at 844.152 kb on - strand, within ABID97_RS04105 at 844.152 kb on - strand, within ABID97_RS04105 at 844.244 kb on + strand at 844.244 kb on + strand at 844.245 kb on - strand at 844.245 kb on - strand at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.386 kb on + strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.387 kb on - strand, within ABID97_RS04110 at 844.476 kb on + strand, within ABID97_RS04110 at 844.476 kb on + strand, within ABID97_RS04110 at 844.477 kb on - strand, within ABID97_RS04110 at 844.477 kb on - strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 845.006 kb on + strand at 845.006 kb on + strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.010 kb on - strand at 845.010 kb on - strand at 845.370 kb on + strand, within ABID97_RS04115 at 845.384 kb on + strand at 845.398 kb on + strand at 845.398 kb on + strand at 845.398 kb on + strand at 845.399 kb on - strand at 845.399 kb on - strand at 845.399 kb on - strand at 845.402 kb on + strand at 845.403 kb on - strand at 845.403 kb on - strand at 845.403 kb on - strand at 845.431 kb on - strand at 845.446 kb on + strand at 845.446 kb on + strand at 845.446 kb on + strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.519 kb on + strand at 845.519 kb on + strand at 845.599 kb on + strand at 845.670 kb on + strand, within ABID97_RS04120 at 845.671 kb on - strand, within ABID97_RS04120 at 845.671 kb on - strand, within ABID97_RS04120
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 844,104 - ABID97_RS04105 0.86 +0.2 844,107 - ABID97_RS04105 0.87 +0.1 844,107 - ABID97_RS04105 0.87 +0.7 844,107 - ABID97_RS04105 0.87 +1.1 844,152 - ABID97_RS04105 0.90 +1.9 844,152 - ABID97_RS04105 0.90 +0.8 844,244 + +0.9 844,244 + +3.0 844,245 - +0.8 844,245 - +0.3 844,386 + ABID97_RS04110 0.13 +1.0 844,386 + ABID97_RS04110 0.13 +1.2 844,386 + ABID97_RS04110 0.13 +0.9 844,386 + ABID97_RS04110 0.13 +1.6 844,386 + ABID97_RS04110 0.13 +0.5 844,387 - ABID97_RS04110 0.13 +0.6 844,387 - ABID97_RS04110 0.13 -0.4 844,387 - ABID97_RS04110 0.13 +0.2 844,387 - ABID97_RS04110 0.13 +0.8 844,387 - ABID97_RS04110 0.13 +0.9 844,387 - ABID97_RS04110 0.13 -1.0 844,387 - ABID97_RS04110 0.13 -1.9 844,387 - ABID97_RS04110 0.13 +0.5 844,476 + ABID97_RS04110 0.31 +0.8 844,476 + ABID97_RS04110 0.31 +0.6 844,477 - ABID97_RS04110 0.32 +0.3 844,477 - ABID97_RS04110 0.32 +1.4 844,725 + ABID97_RS04110 0.82 +1.9 844,725 + ABID97_RS04110 0.82 +0.9 844,725 + ABID97_RS04110 0.82 +0.6 844,725 + ABID97_RS04110 0.82 +0.6 844,725 + ABID97_RS04110 0.82 +0.7 844,725 + ABID97_RS04110 0.82 +0.6 844,726 - ABID97_RS04110 0.83 +0.5 844,726 - ABID97_RS04110 0.83 +0.5 844,726 - ABID97_RS04110 0.83 +0.2 844,726 - ABID97_RS04110 0.83 +0.6 844,726 - ABID97_RS04110 0.83 +1.1 844,726 - ABID97_RS04110 0.83 -0.2 844,726 - ABID97_RS04110 0.83 +1.0 844,726 - ABID97_RS04110 0.83 +0.5 844,894 + +0.9 844,894 + +0.9 844,894 + +0.7 844,894 + +0.7 844,894 + +0.3 844,894 + +1.1 844,894 + +0.7 845,006 + +0.7 845,006 + -0.2 845,007 - +0.7 845,007 - +1.0 845,007 - +0.5 845,007 - +1.4 845,007 - +1.2 845,007 - +0.7 845,007 - +0.9 845,010 - +0.5 845,010 - +0.7 845,370 + ABID97_RS04115 0.88 +1.2 845,384 + +0.7 845,398 + +1.4 845,398 + +1.0 845,398 + +1.0 845,399 - +0.5 845,399 - +1.4 845,399 - +0.7 845,402 + +1.0 845,403 - +1.0 845,403 - +0.5 845,403 - +1.0 845,431 - +1.0 845,446 + +1.6 845,446 + +0.9 845,446 + +1.3 845,447 - +0.7 845,447 - +0.8 845,447 - +0.9 845,447 - +1.5 845,447 - +1.3 845,447 - -0.0 845,447 - +1.0 845,519 + -0.0 845,519 + +2.1 845,599 + +0.7 845,670 + ABID97_RS04120 0.29 +0.9 845,671 - ABID97_RS04120 0.30 +0.8 845,671 - ABID97_RS04120 0.30 +0.5
Or see this region's nucleotide sequence