Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03080 and ABID97_RS03085 are separated by 155 nucleotides ABID97_RS03085 and ABID97_RS03090 overlap by 4 nucleotides ABID97_RS03090 and ABID97_RS03095 are separated by 136 nucleotides
ABID97_RS03080: ABID97_RS03080 - branched-chain amino acid ABC transporter permease, at 623,082 to 623,954
_RS03080
ABID97_RS03085: ABID97_RS03085 - ABC transporter substrate-binding protein, at 624,110 to 625,282
_RS03085
ABID97_RS03090: ABID97_RS03090 - alpha/beta hydrolase, at 625,279 to 626,082
_RS03090
ABID97_RS03095: ABID97_RS03095 - benzoate-CoA ligase family protein, at 626,219 to 627,769
_RS03095
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 623.143 kb on + strand at 623.476 kb on + strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.534 kb on - strand, within ABID97_RS03080 at 623.650 kb on + strand, within ABID97_RS03080 at 623.650 kb on + strand, within ABID97_RS03080 at 623.651 kb on - strand, within ABID97_RS03080 at 623.686 kb on + strand, within ABID97_RS03080 at 623.692 kb on + strand, within ABID97_RS03080 at 623.693 kb on - strand, within ABID97_RS03080 at 623.719 kb on + strand, within ABID97_RS03080 at 623.719 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.821 kb on + strand, within ABID97_RS03080 at 623.822 kb on + strand, within ABID97_RS03080 at 623.822 kb on - strand, within ABID97_RS03080 at 624.111 kb on + strand at 624.198 kb on + strand at 624.198 kb on + strand at 624.198 kb on + strand at 624.198 kb on + strand at 624.199 kb on - strand at 624.199 kb on - strand at 624.199 kb on - strand at 624.369 kb on + strand, within ABID97_RS03085 at 624.369 kb on + strand, within ABID97_RS03085 at 624.369 kb on + strand, within ABID97_RS03085 at 624.403 kb on - strand, within ABID97_RS03085 at 624.564 kb on + strand, within ABID97_RS03085 at 624.564 kb on + strand, within ABID97_RS03085 at 624.609 kb on + strand, within ABID97_RS03085 at 624.610 kb on - strand, within ABID97_RS03085 at 624.610 kb on - strand, within ABID97_RS03085 at 625.116 kb on + strand, within ABID97_RS03085 at 625.116 kb on + strand, within ABID97_RS03085 at 625.117 kb on - strand, within ABID97_RS03085 at 625.158 kb on + strand, within ABID97_RS03085 at 625.158 kb on + strand, within ABID97_RS03085 at 625.159 kb on - strand, within ABID97_RS03085 at 625.159 kb on - strand, within ABID97_RS03085 at 625.718 kb on + strand, within ABID97_RS03090 at 625.880 kb on + strand, within ABID97_RS03090 at 625.880 kb on + strand, within ABID97_RS03090 at 626.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 623,143 + +0.4 623,476 + ABID97_RS03080 0.45 +0.5 623,477 - ABID97_RS03080 0.45 -0.3 623,477 - ABID97_RS03080 0.45 +0.4 623,477 - ABID97_RS03080 0.45 +0.8 623,534 - ABID97_RS03080 0.52 -0.2 623,650 + ABID97_RS03080 0.65 -0.0 623,650 + ABID97_RS03080 0.65 +1.0 623,651 - ABID97_RS03080 0.65 +0.7 623,686 + ABID97_RS03080 0.69 -0.2 623,692 + ABID97_RS03080 0.70 -1.9 623,693 - ABID97_RS03080 0.70 +0.5 623,719 + ABID97_RS03080 0.73 +0.4 623,719 + ABID97_RS03080 0.73 -1.2 623,806 + ABID97_RS03080 0.83 +0.4 623,806 + ABID97_RS03080 0.83 +0.2 623,806 + ABID97_RS03080 0.83 +0.1 623,807 - ABID97_RS03080 0.83 +3.9 623,807 - ABID97_RS03080 0.83 +0.7 623,807 - ABID97_RS03080 0.83 -1.7 623,821 + ABID97_RS03080 0.85 +1.8 623,822 + ABID97_RS03080 0.85 +0.7 623,822 - ABID97_RS03080 0.85 +0.6 624,111 + -0.1 624,198 + +0.4 624,198 + +0.5 624,198 + +1.3 624,198 + +0.2 624,199 - +0.5 624,199 - +1.0 624,199 - +0.2 624,369 + ABID97_RS03085 0.22 +1.2 624,369 + ABID97_RS03085 0.22 -0.3 624,369 + ABID97_RS03085 0.22 +0.4 624,403 - ABID97_RS03085 0.25 -0.2 624,564 + ABID97_RS03085 0.39 -0.6 624,564 + ABID97_RS03085 0.39 +2.0 624,609 + ABID97_RS03085 0.43 +0.2 624,610 - ABID97_RS03085 0.43 +0.5 624,610 - ABID97_RS03085 0.43 -0.8 625,116 + ABID97_RS03085 0.86 -0.8 625,116 + ABID97_RS03085 0.86 -0.0 625,117 - ABID97_RS03085 0.86 +0.1 625,158 + ABID97_RS03085 0.89 -0.3 625,158 + ABID97_RS03085 0.89 -0.4 625,159 - ABID97_RS03085 0.89 +0.8 625,159 - ABID97_RS03085 0.89 +0.6 625,718 + ABID97_RS03090 0.55 -0.2 625,880 + ABID97_RS03090 0.75 -0.6 625,880 + ABID97_RS03090 0.75 +0.2 626,152 + -0.1
Or see this region's nucleotide sequence