Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02825

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02810 and ABID97_RS02815 are separated by 6 nucleotidesABID97_RS02815 and ABID97_RS02820 overlap by 4 nucleotidesABID97_RS02820 and ABID97_RS02825 are separated by 125 nucleotidesABID97_RS02825 and ABID97_RS02830 overlap by 28 nucleotidesABID97_RS02830 and ABID97_RS02835 are separated by 47 nucleotides ABID97_RS02810: ABID97_RS02810 - TerB family tellurite resistance protein, at 575,696 to 576,655 _RS02810 ABID97_RS02815: ABID97_RS02815 - Cu(I)-responsive transcriptional regulator, at 576,662 to 577,078 _RS02815 ABID97_RS02820: ABID97_RS02820 - cation transporter, at 577,075 to 577,269 _RS02820 ABID97_RS02825: ABID97_RS02825 - heavy metal translocating P-type ATPase, at 577,395 to 579,683 _RS02825 ABID97_RS02830: ABID97_RS02830 - GNAT family N-acetyltransferase, at 579,656 to 580,156 _RS02830 ABID97_RS02835: ABID97_RS02835 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 580,204 to 581,490 _RS02835 Position (kb) 577 578 579 580Strain fitness (log2 ratio) -1 0 1 2at 576.464 kb on + strand, within ABID97_RS02810at 576.464 kb on + strand, within ABID97_RS02810at 576.465 kb on - strand, within ABID97_RS02810at 576.465 kb on - strand, within ABID97_RS02810at 576.465 kb on - strand, within ABID97_RS02810at 576.491 kb on + strand, within ABID97_RS02810at 576.492 kb on - strand, within ABID97_RS02810at 576.494 kb on + strand, within ABID97_RS02810at 576.494 kb on + strand, within ABID97_RS02810at 576.495 kb on - strand, within ABID97_RS02810at 576.582 kb on - strandat 576.945 kb on + strand, within ABID97_RS02815at 576.945 kb on + strand, within ABID97_RS02815at 576.946 kb on - strand, within ABID97_RS02815at 577.002 kb on + strand, within ABID97_RS02815at 577.003 kb on - strand, within ABID97_RS02815at 577.003 kb on - strand, within ABID97_RS02815at 577.089 kb on - strandat 577.383 kb on + strandat 577.606 kb on + strandat 577.831 kb on - strand, within ABID97_RS02825at 577.831 kb on - strand, within ABID97_RS02825at 577.831 kb on - strand, within ABID97_RS02825at 577.831 kb on - strand, within ABID97_RS02825at 577.895 kb on + strand, within ABID97_RS02825at 579.516 kb on + strandat 579.516 kb on + strandat 579.517 kb on - strandat 579.517 kb on - strandat 579.517 kb on - strandat 579.762 kb on + strand, within ABID97_RS02830at 579.763 kb on - strand, within ABID97_RS02830at 579.763 kb on - strand, within ABID97_RS02830at 579.798 kb on + strand, within ABID97_RS02830at 579.798 kb on + strand, within ABID97_RS02830at 579.798 kb on + strand, within ABID97_RS02830at 579.799 kb on - strand, within ABID97_RS02830at 579.799 kb on - strand, within ABID97_RS02830at 579.799 kb on - strand, within ABID97_RS02830at 579.984 kb on + strand, within ABID97_RS02830at 579.985 kb on - strand, within ABID97_RS02830at 579.990 kb on + strand, within ABID97_RS02830at 579.990 kb on + strand, within ABID97_RS02830at 579.990 kb on + strand, within ABID97_RS02830at 579.990 kb on + strand, within ABID97_RS02830at 579.991 kb on - strand, within ABID97_RS02830at 579.991 kb on - strand, within ABID97_RS02830at 580.020 kb on + strand, within ABID97_RS02830at 580.020 kb on + strand, within ABID97_RS02830at 580.020 kb on + strand, within ABID97_RS02830at 580.020 kb on + strand, within ABID97_RS02830at 580.021 kb on - strand, within ABID97_RS02830at 580.021 kb on - strand, within ABID97_RS02830at 580.021 kb on - strand, within ABID97_RS02830at 580.021 kb on - strand, within ABID97_RS02830at 580.057 kb on - strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.089 kb on + strand, within ABID97_RS02830at 580.090 kb on - strand, within ABID97_RS02830at 580.090 kb on - strand, within ABID97_RS02830at 580.090 kb on - strand, within ABID97_RS02830at 580.090 kb on - strand, within ABID97_RS02830at 580.090 kb on - strand, within ABID97_RS02830at 580.150 kb on + strandat 580.150 kb on + strandat 580.150 kb on + strandat 580.150 kb on + strandat 580.151 kb on - strandat 580.151 kb on - strandat 580.151 kb on - strandat 580.200 kb on + strandat 580.201 kb on - strandat 580.201 kb on - strandat 580.277 kb on + strandat 580.277 kb on + strandat 580.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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576,464 + ABID97_RS02810 0.80 -0.1
576,464 + ABID97_RS02810 0.80 +0.2
576,465 - ABID97_RS02810 0.80 +0.1
576,465 - ABID97_RS02810 0.80 +0.0
576,465 - ABID97_RS02810 0.80 -0.8
576,491 + ABID97_RS02810 0.83 +1.1
576,492 - ABID97_RS02810 0.83 +0.2
576,494 + ABID97_RS02810 0.83 -0.2
576,494 + ABID97_RS02810 0.83 -0.4
576,495 - ABID97_RS02810 0.83 -0.1
576,582 - +0.8
576,945 + ABID97_RS02815 0.68 +1.0
576,945 + ABID97_RS02815 0.68 +1.6
576,946 - ABID97_RS02815 0.68 +0.1
577,002 + ABID97_RS02815 0.82 +1.1
577,003 - ABID97_RS02815 0.82 -0.3
577,003 - ABID97_RS02815 0.82 +0.3
577,089 - +0.1
577,383 + -0.5
577,606 + -0.8
577,831 - ABID97_RS02825 0.19 -0.9
577,831 - ABID97_RS02825 0.19 -1.6
577,831 - ABID97_RS02825 0.19 +0.4
577,831 - ABID97_RS02825 0.19 -1.1
577,895 + ABID97_RS02825 0.22 -1.4
579,516 + -0.9
579,516 + -1.0
579,517 - -1.3
579,517 - -0.9
579,517 - -1.4
579,762 + ABID97_RS02830 0.21 +0.1
579,763 - ABID97_RS02830 0.21 +0.9
579,763 - ABID97_RS02830 0.21 +0.0
579,798 + ABID97_RS02830 0.28 -0.9
579,798 + ABID97_RS02830 0.28 -1.0
579,798 + ABID97_RS02830 0.28 -0.1
579,799 - ABID97_RS02830 0.29 +0.1
579,799 - ABID97_RS02830 0.29 +2.0
579,799 - ABID97_RS02830 0.29 -0.9
579,984 + ABID97_RS02830 0.65 -0.2
579,985 - ABID97_RS02830 0.66 +0.8
579,990 + ABID97_RS02830 0.67 -0.5
579,990 + ABID97_RS02830 0.67 +0.0
579,990 + ABID97_RS02830 0.67 -0.8
579,990 + ABID97_RS02830 0.67 +0.8
579,991 - ABID97_RS02830 0.67 -0.6
579,991 - ABID97_RS02830 0.67 -0.3
580,020 + ABID97_RS02830 0.73 -0.2
580,020 + ABID97_RS02830 0.73 -0.2
580,020 + ABID97_RS02830 0.73 +0.9
580,020 + ABID97_RS02830 0.73 +0.3
580,021 - ABID97_RS02830 0.73 -0.1
580,021 - ABID97_RS02830 0.73 +0.2
580,021 - ABID97_RS02830 0.73 +0.2
580,021 - ABID97_RS02830 0.73 -0.7
580,057 - ABID97_RS02830 0.80 -0.0
580,089 + ABID97_RS02830 0.86 -0.2
580,089 + ABID97_RS02830 0.86 +0.2
580,089 + ABID97_RS02830 0.86 +0.2
580,089 + ABID97_RS02830 0.86 +2.0
580,089 + ABID97_RS02830 0.86 -0.9
580,089 + ABID97_RS02830 0.86 +0.7
580,089 + ABID97_RS02830 0.86 +0.0
580,089 + ABID97_RS02830 0.86 +0.2
580,089 + ABID97_RS02830 0.86 -0.3
580,089 + ABID97_RS02830 0.86 -0.2
580,089 + ABID97_RS02830 0.86 +0.6
580,090 - ABID97_RS02830 0.87 -0.7
580,090 - ABID97_RS02830 0.87 +0.0
580,090 - ABID97_RS02830 0.87 -0.1
580,090 - ABID97_RS02830 0.87 -0.4
580,090 - ABID97_RS02830 0.87 -0.4
580,150 + -0.6
580,150 + +0.6
580,150 + -0.3
580,150 + -0.1
580,151 - +0.1
580,151 - -0.3
580,151 - +0.3
580,200 + +0.0
580,201 - -0.1
580,201 - +0.1
580,277 + +0.8
580,277 + -0.7
580,278 - -1.2

Or see this region's nucleotide sequence