Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02175

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02170 and ABID97_RS02175 overlap by 4 nucleotidesABID97_RS02175 and ABID97_RS02180 overlap by 4 nucleotides ABID97_RS02170: ABID97_RS02170 - hypothetical protein, at 437,540 to 438,730 _RS02170 ABID97_RS02175: ABID97_RS02175 - class I SAM-dependent methyltransferase, at 438,727 to 439,575 _RS02175 ABID97_RS02180: ABID97_RS02180 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 439,572 to 440,678 _RS02180 Position (kb) 438 439 440Strain fitness (log2 ratio) -1 0 1 2 3at 437.805 kb on + strand, within ABID97_RS02170at 437.806 kb on - strand, within ABID97_RS02170at 437.806 kb on - strand, within ABID97_RS02170at 437.917 kb on + strand, within ABID97_RS02170at 437.917 kb on + strand, within ABID97_RS02170at 437.918 kb on - strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.962 kb on - strand, within ABID97_RS02170at 437.962 kb on - strand, within ABID97_RS02170at 438.044 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.287 kb on + strand, within ABID97_RS02170at 438.287 kb on + strand, within ABID97_RS02170at 438.317 kb on + strand, within ABID97_RS02170at 438.318 kb on - strand, within ABID97_RS02170at 438.323 kb on - strand, within ABID97_RS02170at 438.407 kb on + strand, within ABID97_RS02170at 438.450 kb on + strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.476 kb on + strand, within ABID97_RS02170at 438.477 kb on - strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.485 kb on - strand, within ABID97_RS02170at 438.488 kb on + strand, within ABID97_RS02170at 438.488 kb on + strand, within ABID97_RS02170at 438.537 kb on + strand, within ABID97_RS02170at 438.538 kb on - strand, within ABID97_RS02170at 438.590 kb on + strand, within ABID97_RS02170at 438.591 kb on - strand, within ABID97_RS02170at 438.755 kb on - strandat 438.755 kb on - strandat 438.755 kb on - strandat 438.902 kb on + strand, within ABID97_RS02175at 438.902 kb on + strand, within ABID97_RS02175at 438.903 kb on - strand, within ABID97_RS02175at 438.903 kb on - strand, within ABID97_RS02175at 438.959 kb on + strand, within ABID97_RS02175at 438.960 kb on - strand, within ABID97_RS02175at 438.960 kb on - strand, within ABID97_RS02175at 438.960 kb on - strand, within ABID97_RS02175at 439.077 kb on + strand, within ABID97_RS02175at 439.077 kb on + strand, within ABID97_RS02175at 439.077 kb on + strand, within ABID97_RS02175at 439.078 kb on - strand, within ABID97_RS02175at 439.285 kb on - strand, within ABID97_RS02175at 439.285 kb on - strand, within ABID97_RS02175at 439.345 kb on - strand, within ABID97_RS02175at 439.355 kb on - strand, within ABID97_RS02175at 439.363 kb on + strand, within ABID97_RS02175at 439.363 kb on + strand, within ABID97_RS02175at 439.364 kb on - strand, within ABID97_RS02175at 439.364 kb on - strand, within ABID97_RS02175at 439.364 kb on - strand, within ABID97_RS02175at 439.435 kb on - strand, within ABID97_RS02175at 439.454 kb on + strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.481 kb on + strand, within ABID97_RS02175at 439.481 kb on + strand, within ABID97_RS02175at 439.481 kb on + strand, within ABID97_RS02175at 439.482 kb on - strand, within ABID97_RS02175at 439.500 kb on - strandat 439.563 kb on + strandat 439.563 kb on + strandat 439.563 kb on + strandat 439.564 kb on - strandat 439.564 kb on - strandat 439.564 kb on - strandat 439.663 kb on - strandat 439.723 kb on + strand, within ABID97_RS02180at 439.723 kb on + strand, within ABID97_RS02180at 439.724 kb on - strand, within ABID97_RS02180at 439.753 kb on + strand, within ABID97_RS02180at 439.784 kb on + strand, within ABID97_RS02180at 439.784 kb on + strand, within ABID97_RS02180at 439.785 kb on - strand, within ABID97_RS02180at 439.785 kb on - strand, within ABID97_RS02180at 439.826 kb on + strand, within ABID97_RS02180at 439.826 kb on + strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.829 kb on - strand, within ABID97_RS02180at 439.829 kb on - strand, within ABID97_RS02180at 439.829 kb on - strand, within ABID97_RS02180at 439.906 kb on + strand, within ABID97_RS02180at 439.914 kb on - strand, within ABID97_RS02180at 439.914 kb on - strand, within ABID97_RS02180at 439.972 kb on - strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.026 kb on + strand, within ABID97_RS02180at 440.027 kb on - strand, within ABID97_RS02180at 440.027 kb on - strand, within ABID97_RS02180at 440.052 kb on + strand, within ABID97_RS02180at 440.114 kb on - strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.390 kb on + strand, within ABID97_RS02180at 440.391 kb on - strand, within ABID97_RS02180at 440.391 kb on - strand, within ABID97_RS02180at 440.397 kb on + strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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437,805 + ABID97_RS02170 0.22 +1.9
437,806 - ABID97_RS02170 0.22 +2.8
437,806 - ABID97_RS02170 0.22 +2.5
437,917 + ABID97_RS02170 0.32 +2.5
437,917 + ABID97_RS02170 0.32 +2.0
437,918 - ABID97_RS02170 0.32 +2.7
437,961 + ABID97_RS02170 0.35 +2.2
437,961 + ABID97_RS02170 0.35 +1.7
437,961 + ABID97_RS02170 0.35 +2.5
437,961 + ABID97_RS02170 0.35 +2.3
437,962 - ABID97_RS02170 0.35 +2.6
437,962 - ABID97_RS02170 0.35 +3.7
438,044 + ABID97_RS02170 0.42 +2.5
438,233 + ABID97_RS02170 0.58 +3.0
438,233 + ABID97_RS02170 0.58 +2.7
438,233 + ABID97_RS02170 0.58 +2.4
438,233 + ABID97_RS02170 0.58 +2.4
438,234 - ABID97_RS02170 0.58 +2.8
438,234 - ABID97_RS02170 0.58 +2.4
438,234 - ABID97_RS02170 0.58 +2.9
438,287 + ABID97_RS02170 0.63 +2.6
438,287 + ABID97_RS02170 0.63 +2.5
438,317 + ABID97_RS02170 0.65 +2.2
438,318 - ABID97_RS02170 0.65 +2.8
438,323 - ABID97_RS02170 0.66 +2.7
438,407 + ABID97_RS02170 0.73 +2.9
438,450 + ABID97_RS02170 0.76 +2.3
438,451 - ABID97_RS02170 0.76 +2.3
438,451 - ABID97_RS02170 0.76 +2.7
438,451 - ABID97_RS02170 0.76 +2.6
438,476 + ABID97_RS02170 0.79 +2.9
438,477 - ABID97_RS02170 0.79 +1.6
438,484 + ABID97_RS02170 0.79 +2.4
438,484 + ABID97_RS02170 0.79 +2.3
438,484 + ABID97_RS02170 0.79 +2.5
438,485 - ABID97_RS02170 0.79 +2.4
438,488 + ABID97_RS02170 0.80 +2.4
438,488 + ABID97_RS02170 0.80 +2.7
438,537 + ABID97_RS02170 0.84 +2.5
438,538 - ABID97_RS02170 0.84 +2.5
438,590 + ABID97_RS02170 0.88 +1.5
438,591 - ABID97_RS02170 0.88 +2.4
438,755 - -0.2
438,755 - -0.1
438,755 - +0.0
438,902 + ABID97_RS02175 0.21 +2.1
438,902 + ABID97_RS02175 0.21 +2.0
438,903 - ABID97_RS02175 0.21 +2.3
438,903 - ABID97_RS02175 0.21 +0.6
438,959 + ABID97_RS02175 0.27 +1.6
438,960 - ABID97_RS02175 0.27 +0.6
438,960 - ABID97_RS02175 0.27 +1.1
438,960 - ABID97_RS02175 0.27 +0.4
439,077 + ABID97_RS02175 0.41 +1.4
439,077 + ABID97_RS02175 0.41 +1.8
439,077 + ABID97_RS02175 0.41 +1.6
439,078 - ABID97_RS02175 0.41 +1.2
439,285 - ABID97_RS02175 0.66 +0.5
439,285 - ABID97_RS02175 0.66 +0.1
439,345 - ABID97_RS02175 0.73 +0.5
439,355 - ABID97_RS02175 0.74 +0.4
439,363 + ABID97_RS02175 0.75 +0.8
439,363 + ABID97_RS02175 0.75 +0.8
439,364 - ABID97_RS02175 0.75 +1.3
439,364 - ABID97_RS02175 0.75 +1.0
439,364 - ABID97_RS02175 0.75 +0.4
439,435 - ABID97_RS02175 0.83 +0.8
439,454 + ABID97_RS02175 0.86 +1.4
439,455 - ABID97_RS02175 0.86 +0.6
439,455 - ABID97_RS02175 0.86 +0.5
439,455 - ABID97_RS02175 0.86 +1.2
439,455 - ABID97_RS02175 0.86 +0.3
439,481 + ABID97_RS02175 0.89 +1.1
439,481 + ABID97_RS02175 0.89 +1.2
439,481 + ABID97_RS02175 0.89 +1.5
439,482 - ABID97_RS02175 0.89 +1.0
439,500 - +0.7
439,563 + -0.8
439,563 + -0.3
439,563 + -0.1
439,564 - +0.0
439,564 - -0.1
439,564 - +0.1
439,663 - +1.7
439,723 + ABID97_RS02180 0.14 +1.6
439,723 + ABID97_RS02180 0.14 +1.6
439,724 - ABID97_RS02180 0.14 +1.4
439,753 + ABID97_RS02180 0.16 +1.6
439,784 + ABID97_RS02180 0.19 +1.4
439,784 + ABID97_RS02180 0.19 +1.2
439,785 - ABID97_RS02180 0.19 +1.6
439,785 - ABID97_RS02180 0.19 +2.0
439,826 + ABID97_RS02180 0.23 +1.5
439,826 + ABID97_RS02180 0.23 +1.6
439,827 - ABID97_RS02180 0.23 +1.4
439,827 - ABID97_RS02180 0.23 +1.6
439,827 - ABID97_RS02180 0.23 +1.4
439,827 - ABID97_RS02180 0.23 +1.8
439,827 - ABID97_RS02180 0.23 +1.6
439,827 - ABID97_RS02180 0.23 +2.0
439,827 - ABID97_RS02180 0.23 +1.1
439,827 - ABID97_RS02180 0.23 +1.8
439,827 - ABID97_RS02180 0.23 +1.7
439,827 - ABID97_RS02180 0.23 +1.7
439,829 - ABID97_RS02180 0.23 +1.7
439,829 - ABID97_RS02180 0.23 +2.0
439,829 - ABID97_RS02180 0.23 +1.5
439,906 + ABID97_RS02180 0.30 +1.4
439,914 - ABID97_RS02180 0.31 +1.6
439,914 - ABID97_RS02180 0.31 +1.6
439,972 - ABID97_RS02180 0.36 +1.7
440,018 + ABID97_RS02180 0.40 +1.6
440,018 + ABID97_RS02180 0.40 +1.6
440,018 + ABID97_RS02180 0.40 +1.3
440,018 + ABID97_RS02180 0.40 +1.6
440,018 + ABID97_RS02180 0.40 +1.1
440,022 + ABID97_RS02180 0.41 +1.5
440,022 + ABID97_RS02180 0.41 +1.9
440,022 + ABID97_RS02180 0.41 +1.3
440,022 + ABID97_RS02180 0.41 +2.1
440,022 + ABID97_RS02180 0.41 +1.7
440,022 + ABID97_RS02180 0.41 +1.7
440,023 - ABID97_RS02180 0.41 +1.7
440,023 - ABID97_RS02180 0.41 +1.5
440,023 - ABID97_RS02180 0.41 +1.7
440,023 - ABID97_RS02180 0.41 +1.9
440,023 - ABID97_RS02180 0.41 +1.7
440,023 - ABID97_RS02180 0.41 +1.6
440,023 - ABID97_RS02180 0.41 +1.2
440,026 + ABID97_RS02180 0.41 +1.4
440,027 - ABID97_RS02180 0.41 +1.0
440,027 - ABID97_RS02180 0.41 +2.2
440,052 + ABID97_RS02180 0.43 +0.6
440,114 - ABID97_RS02180 0.49 +1.9
440,188 + ABID97_RS02180 0.56 +1.8
440,188 + ABID97_RS02180 0.56 +2.0
440,188 + ABID97_RS02180 0.56 +1.6
440,188 + ABID97_RS02180 0.56 +1.8
440,189 - ABID97_RS02180 0.56 +1.2
440,189 - ABID97_RS02180 0.56 +1.6
440,189 - ABID97_RS02180 0.56 +1.0
440,189 - ABID97_RS02180 0.56 +0.6
440,189 - ABID97_RS02180 0.56 +1.6
440,390 + ABID97_RS02180 0.74 +2.4
440,391 - ABID97_RS02180 0.74 +1.5
440,391 - ABID97_RS02180 0.74 +1.9
440,397 + ABID97_RS02180 0.75 +1.5
440,398 - ABID97_RS02180 0.75 +1.5
440,398 - ABID97_RS02180 0.75 +1.5
440,398 - ABID97_RS02180 0.75 +1.0
440,398 - ABID97_RS02180 0.75 +1.8
440,398 - ABID97_RS02180 0.75 +1.4

Or see this region's nucleotide sequence