Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23030

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23025 and PFLU_RS23030 overlap by 8 nucleotidesPFLU_RS23030 and PFLU_RS23035 are separated by 19 nucleotides PFLU_RS23025: PFLU_RS23025 - DNA polymerase III subunit delta', at 5,175,611 to 5,176,600 _RS23025 PFLU_RS23030: PFLU_RS23030 - dTMP kinase, at 5,176,593 to 5,177,225 _RS23030 PFLU_RS23035: PFLU_RS23035 - endolytic transglycosylase MltG, at 5,177,245 to 5,178,378 _RS23035 Position (kb) 5176 5177 5178Strain fitness (log2 ratio) -2 -1 0 1 2at 5175.613 kb on - strandat 5177.237 kb on - strandat 5177.410 kb on - strand, within PFLU_RS23035at 5177.410 kb on - strand, within PFLU_RS23035at 5177.410 kb on - strand, within PFLU_RS23035at 5177.410 kb on - strand, within PFLU_RS23035at 5177.436 kb on + strand, within PFLU_RS23035at 5177.436 kb on + strand, within PFLU_RS23035at 5177.437 kb on - strand, within PFLU_RS23035at 5177.465 kb on + strand, within PFLU_RS23035at 5177.465 kb on + strand, within PFLU_RS23035at 5177.465 kb on + strand, within PFLU_RS23035at 5177.465 kb on + strand, within PFLU_RS23035at 5177.465 kb on + strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.466 kb on - strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.558 kb on + strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.559 kb on - strand, within PFLU_RS23035at 5177.567 kb on + strand, within PFLU_RS23035at 5177.567 kb on + strand, within PFLU_RS23035at 5177.567 kb on + strand, within PFLU_RS23035at 5177.568 kb on - strand, within PFLU_RS23035at 5177.612 kb on + strand, within PFLU_RS23035at 5177.612 kb on + strand, within PFLU_RS23035at 5177.613 kb on - strand, within PFLU_RS23035at 5177.630 kb on + strand, within PFLU_RS23035at 5177.630 kb on + strand, within PFLU_RS23035at 5177.630 kb on + strand, within PFLU_RS23035at 5177.630 kb on + strand, within PFLU_RS23035at 5177.631 kb on - strand, within PFLU_RS23035at 5177.631 kb on - strand, within PFLU_RS23035at 5177.631 kb on - strand, within PFLU_RS23035at 5177.631 kb on - strand, within PFLU_RS23035at 5177.774 kb on + strand, within PFLU_RS23035at 5177.774 kb on + strand, within PFLU_RS23035at 5177.774 kb on + strand, within PFLU_RS23035at 5177.775 kb on - strand, within PFLU_RS23035at 5177.775 kb on - strand, within PFLU_RS23035at 5177.832 kb on + strand, within PFLU_RS23035at 5177.833 kb on - strand, within PFLU_RS23035at 5177.833 kb on - strand, within PFLU_RS23035at 5177.834 kb on + strand, within PFLU_RS23035at 5177.834 kb on + strand, within PFLU_RS23035at 5177.834 kb on + strand, within PFLU_RS23035at 5177.834 kb on + strand, within PFLU_RS23035at 5177.835 kb on - strand, within PFLU_RS23035at 5177.835 kb on - strand, within PFLU_RS23035at 5177.835 kb on - strand, within PFLU_RS23035at 5177.835 kb on - strand, within PFLU_RS23035at 5177.835 kb on - strand, within PFLU_RS23035at 5177.882 kb on + strand, within PFLU_RS23035at 5177.882 kb on + strand, within PFLU_RS23035at 5177.882 kb on + strand, within PFLU_RS23035at 5177.882 kb on + strand, within PFLU_RS23035at 5177.883 kb on - strand, within PFLU_RS23035at 5177.883 kb on - strand, within PFLU_RS23035at 5177.883 kb on - strand, within PFLU_RS23035at 5177.883 kb on - strand, within PFLU_RS23035at 5177.883 kb on - strand, within PFLU_RS23035at 5177.883 kb on - strand, within PFLU_RS23035at 5178.047 kb on + strand, within PFLU_RS23035at 5178.047 kb on + strand, within PFLU_RS23035at 5178.048 kb on - strand, within PFLU_RS23035at 5178.048 kb on - strand, within PFLU_RS23035at 5178.048 kb on - strand, within PFLU_RS23035at 5178.161 kb on + strand, within PFLU_RS23035at 5178.161 kb on + strand, within PFLU_RS23035at 5178.161 kb on + strand, within PFLU_RS23035at 5178.162 kb on - strand, within PFLU_RS23035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,175,613 - -2.7
5,177,237 - -0.2
5,177,410 - PFLU_RS23035 0.15 +2.1
5,177,410 - PFLU_RS23035 0.15 -0.4
5,177,410 - PFLU_RS23035 0.15 +0.3
5,177,410 - PFLU_RS23035 0.15 -1.3
5,177,436 + PFLU_RS23035 0.17 -0.4
5,177,436 + PFLU_RS23035 0.17 -0.2
5,177,437 - PFLU_RS23035 0.17 -0.6
5,177,465 + PFLU_RS23035 0.19 -0.3
5,177,465 + PFLU_RS23035 0.19 -0.5
5,177,465 + PFLU_RS23035 0.19 +0.3
5,177,465 + PFLU_RS23035 0.19 +1.3
5,177,465 + PFLU_RS23035 0.19 +0.3
5,177,466 - PFLU_RS23035 0.19 -0.7
5,177,466 - PFLU_RS23035 0.19 +1.2
5,177,466 - PFLU_RS23035 0.19 +0.6
5,177,466 - PFLU_RS23035 0.19 +0.5
5,177,466 - PFLU_RS23035 0.19 -0.6
5,177,466 - PFLU_RS23035 0.19 +0.2
5,177,466 - PFLU_RS23035 0.19 +0.4
5,177,558 + PFLU_RS23035 0.28 +1.0
5,177,558 + PFLU_RS23035 0.28 +1.3
5,177,558 + PFLU_RS23035 0.28 -0.7
5,177,558 + PFLU_RS23035 0.28 +0.8
5,177,558 + PFLU_RS23035 0.28 +0.6
5,177,558 + PFLU_RS23035 0.28 -1.0
5,177,558 + PFLU_RS23035 0.28 +0.7
5,177,558 + PFLU_RS23035 0.28 +0.8
5,177,558 + PFLU_RS23035 0.28 +0.4
5,177,558 + PFLU_RS23035 0.28 -1.4
5,177,558 + PFLU_RS23035 0.28 -0.5
5,177,558 + PFLU_RS23035 0.28 -0.9
5,177,558 + PFLU_RS23035 0.28 -0.3
5,177,558 + PFLU_RS23035 0.28 -0.4
5,177,558 + PFLU_RS23035 0.28 -1.0
5,177,558 + PFLU_RS23035 0.28 +1.1
5,177,558 + PFLU_RS23035 0.28 +0.2
5,177,558 + PFLU_RS23035 0.28 -2.6
5,177,558 + PFLU_RS23035 0.28 +0.5
5,177,558 + PFLU_RS23035 0.28 +0.3
5,177,558 + PFLU_RS23035 0.28 -1.5
5,177,558 + PFLU_RS23035 0.28 +1.4
5,177,558 + PFLU_RS23035 0.28 -0.1
5,177,558 + PFLU_RS23035 0.28 +0.6
5,177,558 + PFLU_RS23035 0.28 +1.1
5,177,558 + PFLU_RS23035 0.28 +0.3
5,177,558 + PFLU_RS23035 0.28 -1.1
5,177,559 - PFLU_RS23035 0.28 +0.2
5,177,559 - PFLU_RS23035 0.28 +0.0
5,177,559 - PFLU_RS23035 0.28 +0.8
5,177,559 - PFLU_RS23035 0.28 +1.2
5,177,559 - PFLU_RS23035 0.28 +0.8
5,177,559 - PFLU_RS23035 0.28 +0.6
5,177,559 - PFLU_RS23035 0.28 -0.1
5,177,559 - PFLU_RS23035 0.28 -0.1
5,177,559 - PFLU_RS23035 0.28 +0.6
5,177,559 - PFLU_RS23035 0.28 -0.1
5,177,559 - PFLU_RS23035 0.28 +0.2
5,177,559 - PFLU_RS23035 0.28 -0.1
5,177,559 - PFLU_RS23035 0.28 +1.1
5,177,559 - PFLU_RS23035 0.28 +0.6
5,177,559 - PFLU_RS23035 0.28 -0.8
5,177,559 - PFLU_RS23035 0.28 -0.4
5,177,559 - PFLU_RS23035 0.28 -1.0
5,177,559 - PFLU_RS23035 0.28 -0.5
5,177,559 - PFLU_RS23035 0.28 -0.8
5,177,559 - PFLU_RS23035 0.28 -0.2
5,177,559 - PFLU_RS23035 0.28 +0.1
5,177,559 - PFLU_RS23035 0.28 +0.4
5,177,567 + PFLU_RS23035 0.28 +0.0
5,177,567 + PFLU_RS23035 0.28 -1.0
5,177,567 + PFLU_RS23035 0.28 +0.9
5,177,568 - PFLU_RS23035 0.28 +0.0
5,177,612 + PFLU_RS23035 0.32 -0.2
5,177,612 + PFLU_RS23035 0.32 +0.3
5,177,613 - PFLU_RS23035 0.32 -0.5
5,177,630 + PFLU_RS23035 0.34 -1.4
5,177,630 + PFLU_RS23035 0.34 +1.1
5,177,630 + PFLU_RS23035 0.34 -1.5
5,177,630 + PFLU_RS23035 0.34 +0.6
5,177,631 - PFLU_RS23035 0.34 +0.8
5,177,631 - PFLU_RS23035 0.34 +0.3
5,177,631 - PFLU_RS23035 0.34 +1.0
5,177,631 - PFLU_RS23035 0.34 -0.2
5,177,774 + PFLU_RS23035 0.47 -0.2
5,177,774 + PFLU_RS23035 0.47 +0.9
5,177,774 + PFLU_RS23035 0.47 -0.1
5,177,775 - PFLU_RS23035 0.47 -0.4
5,177,775 - PFLU_RS23035 0.47 +0.8
5,177,832 + PFLU_RS23035 0.52 -1.8
5,177,833 - PFLU_RS23035 0.52 +0.3
5,177,833 - PFLU_RS23035 0.52 -1.3
5,177,834 + PFLU_RS23035 0.52 +0.2
5,177,834 + PFLU_RS23035 0.52 +1.1
5,177,834 + PFLU_RS23035 0.52 -1.3
5,177,834 + PFLU_RS23035 0.52 -0.4
5,177,835 - PFLU_RS23035 0.52 +0.1
5,177,835 - PFLU_RS23035 0.52 -0.4
5,177,835 - PFLU_RS23035 0.52 +0.3
5,177,835 - PFLU_RS23035 0.52 +0.8
5,177,835 - PFLU_RS23035 0.52 -0.2
5,177,882 + PFLU_RS23035 0.56 +0.5
5,177,882 + PFLU_RS23035 0.56 +0.6
5,177,882 + PFLU_RS23035 0.56 -1.1
5,177,882 + PFLU_RS23035 0.56 +0.8
5,177,883 - PFLU_RS23035 0.56 +0.6
5,177,883 - PFLU_RS23035 0.56 -0.8
5,177,883 - PFLU_RS23035 0.56 -0.8
5,177,883 - PFLU_RS23035 0.56 +0.1
5,177,883 - PFLU_RS23035 0.56 +0.9
5,177,883 - PFLU_RS23035 0.56 +0.7
5,178,047 + PFLU_RS23035 0.71 +1.2
5,178,047 + PFLU_RS23035 0.71 +0.3
5,178,048 - PFLU_RS23035 0.71 -0.2
5,178,048 - PFLU_RS23035 0.71 +0.0
5,178,048 - PFLU_RS23035 0.71 +0.2
5,178,161 + PFLU_RS23035 0.81 +0.2
5,178,161 + PFLU_RS23035 0.81 +0.6
5,178,161 + PFLU_RS23035 0.81 +2.1
5,178,162 - PFLU_RS23035 0.81 +0.8

Or see this region's nucleotide sequence