Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS18020

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18010 and PFLU_RS18015 are separated by 100 nucleotidesPFLU_RS18015 and PFLU_RS18020 overlap by 4 nucleotidesPFLU_RS18020 and PFLU_RS18025 are separated by 15 nucleotidesPFLU_RS18025 and PFLU_RS18030 are separated by 47 nucleotides PFLU_RS18010: PFLU_RS18010 - dihydrofolate reductase, at 4,086,541 to 4,087,485 _RS18010 PFLU_RS18015: PFLU_RS18015 - energy transducer TonB, at 4,087,586 to 4,088,359 _RS18015 PFLU_RS18020: PFLU_RS18020 - protein TolR, at 4,088,356 to 4,088,802 _RS18020 PFLU_RS18025: PFLU_RS18025 - protein TolQ, at 4,088,818 to 4,089,510 _RS18025 PFLU_RS18030: PFLU_RS18030 - phytase, at 4,089,558 to 4,091,423 _RS18030 Position (kb) 4088 4089Strain fitness (log2 ratio) -2 -1 0 1at 4087.445 kb on - strandat 4087.445 kb on - strandat 4087.456 kb on - strandat 4087.587 kb on + strandat 4087.672 kb on + strand, within PFLU_RS18015at 4087.672 kb on + strand, within PFLU_RS18015at 4087.764 kb on + strand, within PFLU_RS18015at 4087.764 kb on + strand, within PFLU_RS18015at 4088.179 kb on + strand, within PFLU_RS18015at 4088.180 kb on - strand, within PFLU_RS18015at 4088.180 kb on - strand, within PFLU_RS18015at 4088.465 kb on + strand, within PFLU_RS18020at 4088.465 kb on + strand, within PFLU_RS18020at 4088.466 kb on - strand, within PFLU_RS18020at 4088.494 kb on + strand, within PFLU_RS18020at 4088.583 kb on - strand, within PFLU_RS18020at 4088.583 kb on - strand, within PFLU_RS18020at 4088.583 kb on - strand, within PFLU_RS18020at 4088.744 kb on + strand, within PFLU_RS18020at 4088.744 kb on + strand, within PFLU_RS18020at 4088.744 kb on + strand, within PFLU_RS18020at 4088.744 kb on + strand, within PFLU_RS18020at 4088.745 kb on - strand, within PFLU_RS18020at 4088.745 kb on - strand, within PFLU_RS18020at 4088.745 kb on - strand, within PFLU_RS18020at 4088.745 kb on - strand, within PFLU_RS18020at 4088.897 kb on + strand, within PFLU_RS18025at 4088.898 kb on - strand, within PFLU_RS18025at 4088.942 kb on + strand, within PFLU_RS18025at 4089.101 kb on + strand, within PFLU_RS18025at 4089.101 kb on + strand, within PFLU_RS18025at 4089.102 kb on - strand, within PFLU_RS18025at 4089.402 kb on - strand, within PFLU_RS18025at 4089.489 kb on + strandat 4089.489 kb on + strandat 4089.489 kb on + strandat 4089.490 kb on - strandat 4089.490 kb on - strandat 4089.490 kb on - strandat 4089.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,087,445 - +1.1
4,087,445 - +0.3
4,087,456 - -0.4
4,087,587 + +0.4
4,087,672 + PFLU_RS18015 0.11 +0.5
4,087,672 + PFLU_RS18015 0.11 +0.3
4,087,764 + PFLU_RS18015 0.23 -1.3
4,087,764 + PFLU_RS18015 0.23 +0.3
4,088,179 + PFLU_RS18015 0.77 -0.6
4,088,180 - PFLU_RS18015 0.77 +0.3
4,088,180 - PFLU_RS18015 0.77 +0.1
4,088,465 + PFLU_RS18020 0.24 -0.1
4,088,465 + PFLU_RS18020 0.24 +0.3
4,088,466 - PFLU_RS18020 0.25 +0.3
4,088,494 + PFLU_RS18020 0.31 -2.6
4,088,583 - PFLU_RS18020 0.51 -0.1
4,088,583 - PFLU_RS18020 0.51 +0.7
4,088,583 - PFLU_RS18020 0.51 +1.4
4,088,744 + PFLU_RS18020 0.87 -0.0
4,088,744 + PFLU_RS18020 0.87 -0.8
4,088,744 + PFLU_RS18020 0.87 -0.8
4,088,744 + PFLU_RS18020 0.87 -2.2
4,088,745 - PFLU_RS18020 0.87 -0.4
4,088,745 - PFLU_RS18020 0.87 -0.3
4,088,745 - PFLU_RS18020 0.87 +0.1
4,088,745 - PFLU_RS18020 0.87 -1.0
4,088,897 + PFLU_RS18025 0.11 -0.5
4,088,898 - PFLU_RS18025 0.12 +1.4
4,088,942 + PFLU_RS18025 0.18 +0.8
4,089,101 + PFLU_RS18025 0.41 -0.5
4,089,101 + PFLU_RS18025 0.41 -0.6
4,089,102 - PFLU_RS18025 0.41 +0.6
4,089,402 - PFLU_RS18025 0.84 -0.5
4,089,489 + -0.3
4,089,489 + +1.2
4,089,489 + +0.0
4,089,490 - -1.5
4,089,490 - +0.3
4,089,490 - +0.8
4,089,522 + -1.8

Or see this region's nucleotide sequence