Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16610

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
3,762,696	+		PFLU_RS16605	0.23	+1.4
3,762,696	+		PFLU_RS16605	0.23	+1.7
3,762,697	-		PFLU_RS16605	0.23	+0.4
3,762,762	+		PFLU_RS16605	0.31	+0.5
3,762,859	+		PFLU_RS16605	0.41	-0.3
3,762,981	+		PFLU_RS16605	0.55	+0.2
3,762,981	+		PFLU_RS16605	0.55	+0.8
3,762,981	+		PFLU_RS16605	0.55	+0.4
3,762,981	+		PFLU_RS16605	0.55	-0.9
3,763,005	+		PFLU_RS16605	0.58	-1.2
3,763,046	+		PFLU_RS16605	0.62	+0.5
3,763,080	+		PFLU_RS16605	0.66	+0.8
3,763,081	-		PFLU_RS16605	0.66	-0.7
3,763,081	-		PFLU_RS16605	0.66	+1.9
3,763,081	-		PFLU_RS16605	0.66	+0.2
3,763,081	-		PFLU_RS16605	0.66	+1.0
3,763,083	+		PFLU_RS16605	0.66	-0.4
3,763,083	+		PFLU_RS16605	0.66	-0.9
3,763,083	+		PFLU_RS16605	0.66	+2.3
3,763,083	+		PFLU_RS16605	0.66	+0.2
3,763,084	-		PFLU_RS16605	0.66	+0.5
3,763,084	-		PFLU_RS16605	0.66	+1.4
3,763,084	-		PFLU_RS16605	0.66	-0.3
3,763,084	-		PFLU_RS16605	0.66	+0.1
3,763,119	+		PFLU_RS16605	0.70	+1.0
3,763,284	+		PFLU_RS16605	0.89	+0.9
3,763,285	-		PFLU_RS16605	0.89	+1.1
3,763,302	+				-0.8
3,763,303	-				-0.4
3,763,303	-				-0.9
3,763,303	-				-0.9
3,763,314	+				-0.3
3,763,315	-				+1.3
3,763,315	-				+0.0
3,763,402	-				-0.6
3,763,426	-				-0.6
3,763,454	+				+0.4
3,763,454	+				+3.3
3,763,454	+				+0.8
3,763,454	+				+1.2
3,763,454	+				+0.6
3,763,454	+				-0.2
3,763,454	+				-1.1
3,763,454	+				+1.3
3,763,454	+				+0.4
3,763,455	-				-1.1
3,763,455	-				+0.7
3,763,455	-				-0.2
3,763,455	-				-0.9
3,763,455	-				-0.7
3,763,455	-				-1.6
3,763,455	-				+0.6
3,763,455	-				-0.1
3,763,455	-				+0.0
3,763,485	+				-1.5
3,763,486	-				+0.1
3,763,486	-				-0.9
3,763,486	-				+0.1
3,763,562	+				+0.2
3,763,562	+				-0.5
3,763,562	+				-0.8
3,763,562	+				+0.4
3,763,563	-				+1.7
3,763,563	-				-2.1
3,763,563	-				-0.5
3,763,563	-				-0.6
3,763,563	-				+0.6
3,763,602	-				-0.0
3,763,715	+				-0.3
3,763,715	+				-0.3
3,763,716	-				-0.5
3,763,788	-		PFLU_RS16610	0.14	+0.1
3,763,836	+		PFLU_RS16610	0.17	+2.1
3,763,836	+		PFLU_RS16610	0.17	-1.8
3,763,836	+		PFLU_RS16610	0.17	+1.5
3,763,837	-		PFLU_RS16610	0.18	+0.3
3,763,837	-		PFLU_RS16610	0.18	+0.7
3,763,837	-		PFLU_RS16610	0.18	+0.3
3,763,837	-		PFLU_RS16610	0.18	+2.3
3,763,860	+		PFLU_RS16610	0.19	-0.2
3,763,860	+		PFLU_RS16610	0.19	+1.2
3,763,860	+		PFLU_RS16610	0.19	+0.3
3,763,860	+		PFLU_RS16610	0.19	-0.5
3,763,860	+		PFLU_RS16610	0.19	+0.5
3,763,860	+		PFLU_RS16610	0.19	-2.1
3,763,861	-		PFLU_RS16610	0.19	+0.1
3,763,914	+		PFLU_RS16610	0.23	-1.9
3,763,915	-		PFLU_RS16610	0.23	-0.7
3,764,106	+		PFLU_RS16610	0.37	+1.1
3,764,106	+		PFLU_RS16610	0.37	-2.6
3,764,107	-		PFLU_RS16610	0.37	-0.5
3,764,107	-		PFLU_RS16610	0.37	-1.6
3,764,163	-		PFLU_RS16610	0.41	+1.3
3,764,166	+		PFLU_RS16610	0.41	+1.1
3,764,166	+		PFLU_RS16610	0.41	+0.8
3,764,166	+		PFLU_RS16610	0.41	+0.4
3,764,166	+		PFLU_RS16610	0.41	-0.7
3,764,166	+		PFLU_RS16610	0.41	+0.6
3,764,166	+		PFLU_RS16610	0.41	-0.2
3,764,167	-		PFLU_RS16610	0.41	-0.9
3,764,167	-		PFLU_RS16610	0.41	-0.5
3,764,167	-		PFLU_RS16610	0.41	-1.0
3,764,167	-		PFLU_RS16610	0.41	+0.1
3,764,167	-		PFLU_RS16610	0.41	+0.7
3,764,167	-		PFLU_RS16610	0.41	-0.0
3,764,271	+		PFLU_RS16610	0.49	-1.4
3,764,272	-		PFLU_RS16610	0.49	-0.4
3,764,442	+		PFLU_RS16610	0.61	+0.2
3,764,442	+		PFLU_RS16610	0.61	+1.3
3,764,442	+		PFLU_RS16610	0.61	-0.1
3,764,442	+		PFLU_RS16610	0.61	-2.0
3,764,442	+		PFLU_RS16610	0.61	+0.7
3,764,442	+		PFLU_RS16610	0.61	+0.1
3,764,442	+		PFLU_RS16610	0.61	+0.6
3,764,443	-		PFLU_RS16610	0.61	-0.6
3,764,446	+		PFLU_RS16610	0.61	-0.0
3,764,446	+		PFLU_RS16610	0.61	-1.2
3,764,446	+		PFLU_RS16610	0.61	+0.4
3,764,447	-		PFLU_RS16610	0.61	+1.1
3,764,447	-		PFLU_RS16610	0.61	+0.9
3,764,447	-		PFLU_RS16610	0.61	-1.0
3,764,470	-		PFLU_RS16610	0.63	+0.0
3,764,470	-		PFLU_RS16610	0.63	-0.6
3,764,563	-		PFLU_RS16610	0.70	+0.9
3,764,712	+		PFLU_RS16610	0.80	-1.4
3,764,712	+		PFLU_RS16610	0.80	+0.5
3,764,712	+		PFLU_RS16610	0.80	+1.1
3,764,712	+		PFLU_RS16610	0.80	-1.4
3,764,712	+		PFLU_RS16610	0.80	-0.0
3,764,712	+		PFLU_RS16610	0.80	-1.0
3,764,712	+		PFLU_RS16610	0.80	-0.2
3,764,712	+		PFLU_RS16610	0.80	+0.4
3,764,713	-		PFLU_RS16610	0.80	-0.6
3,764,713	-		PFLU_RS16610	0.80	+0.1
3,764,713	-		PFLU_RS16610	0.80	-1.5
3,764,713	-		PFLU_RS16610	0.80	+0.3
3,764,713	-		PFLU_RS16610	0.80	-0.8
3,764,713	-		PFLU_RS16610	0.80	+0.1
3,764,713	-		PFLU_RS16610	0.80	-0.1
3,764,713	-		PFLU_RS16610	0.80	-0.4
3,764,713	-		PFLU_RS16610	0.80	-0.4
3,764,713	-		PFLU_RS16610	0.80	-1.1
3,764,871	+				-0.2
3,764,871	+				-0.9
3,764,871	+				-1.6
3,764,872	-				+0.6
3,764,872	-				-0.8
3,764,872	-				+0.3
3,764,892	+				-1.1
3,764,892	+				+0.1
3,764,893	-				+0.7
3,764,893	-				+0.2
3,764,893	-				-0.2
3,764,893	-				-0.5
3,764,908	-				+0.2
3,764,908	-				-0.8
3,764,913	+				+0.9
3,764,913	+				+0.5
3,764,983	-				-1.3
3,765,004	+				-1.2
3,765,005	-				+0.2
3,765,008	-				-2.4
3,765,294	+				+0.1
3,765,294	+				+0.9
3,765,343	-				+1.5
3,765,595	+		PFLU_RS16615	0.37	+0.5
3,765,595	+		PFLU_RS16615	0.37	+0.1
3,765,595	+		PFLU_RS16615	0.37	+1.4
3,765,596	-		PFLU_RS16615	0.37	-0.4
3,765,596	-		PFLU_RS16615	0.37	-2.1
3,765,596	-		PFLU_RS16615	0.37	-1.5
3,765,673	+		PFLU_RS16615	0.46	-2.7
3,765,784	-		PFLU_RS16615	0.59	+0.9
3,765,836	+		PFLU_RS16615	0.65	+1.2
3,765,836	+		PFLU_RS16615	0.65	-1.7
3,765,836	+		PFLU_RS16615	0.65	-0.5
3,765,836	+		PFLU_RS16615	0.65	+2.9
3,765,837	-		PFLU_RS16615	0.65	-0.3
3,765,837	-		PFLU_RS16615	0.65	-0.8
3,765,837	-		PFLU_RS16615	0.65	+1.7
3,765,837	-		PFLU_RS16615	0.65	+1.1
3,765,837	-		PFLU_RS16615	0.65	+0.8
3,765,894	+		PFLU_RS16615	0.71	+0.3
3,765,894	+		PFLU_RS16615	0.71	+1.2
3,765,894	+		PFLU_RS16615	0.71	-0.6
3,765,895	-		PFLU_RS16615	0.72	-0.8
3,765,895	-		PFLU_RS16615	0.72	-1.4