Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS08670 and PFLU_RS08675 overlap by 4 nucleotides PFLU_RS08675 and PFLU_RS08680 overlap by 4 nucleotides PFLU_RS08680 and PFLU_RS08685 overlap by 8 nucleotides
PFLU_RS08670: PFLU_RS08670 - heme lyase CcmF/NrfE family subunit, at 1,927,299 to 1,929,287
_RS08670
PFLU_RS08675: PFLU_RS08675 - DsbE family thiol:disulfide interchange protein, at 1,929,284 to 1,929,820
_RS08675
PFLU_RS08680: PFLU_RS08680 - cytochrome c-type biogenesis protein CcmH, at 1,929,817 to 1,930,290
_RS08680
PFLU_RS08685: PFLU_RS08685 - c-type cytochrome biogenesis protein CcmI, at 1,930,283 to 1,931,470
_RS08685
Position (kb) 1929
1930 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1928.951 kb on + strand, within PFLU_RS08670 at 1928.951 kb on + strand, within PFLU_RS08670 at 1928.952 kb on - strand, within PFLU_RS08670 at 1929.027 kb on + strand, within PFLU_RS08670 at 1929.027 kb on + strand, within PFLU_RS08670 at 1929.090 kb on + strand at 1929.090 kb on + strand at 1929.090 kb on + strand at 1929.090 kb on + strand at 1929.090 kb on + strand at 1929.090 kb on + strand at 1929.091 kb on - strand at 1929.091 kb on - strand at 1929.283 kb on + strand at 1929.357 kb on - strand, within PFLU_RS08675 at 1929.563 kb on + strand, within PFLU_RS08675 at 1929.563 kb on + strand, within PFLU_RS08675 at 1929.563 kb on + strand, within PFLU_RS08675 at 1929.575 kb on + strand, within PFLU_RS08675 at 1929.575 kb on + strand, within PFLU_RS08675 at 1929.575 kb on + strand, within PFLU_RS08675 at 1929.576 kb on - strand, within PFLU_RS08675 at 1929.576 kb on - strand, within PFLU_RS08675 at 1929.683 kb on + strand, within PFLU_RS08675 at 1929.684 kb on - strand, within PFLU_RS08675 at 1929.737 kb on + strand, within PFLU_RS08675 at 1929.737 kb on + strand, within PFLU_RS08675 at 1929.737 kb on + strand, within PFLU_RS08675 at 1929.737 kb on + strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.738 kb on - strand, within PFLU_RS08675 at 1929.889 kb on + strand, within PFLU_RS08680 at 1929.889 kb on + strand, within PFLU_RS08680 at 1929.890 kb on - strand, within PFLU_RS08680 at 1929.890 kb on - strand, within PFLU_RS08680 at 1930.409 kb on + strand, within PFLU_RS08685 at 1930.409 kb on + strand, within PFLU_RS08685 at 1930.455 kb on + strand, within PFLU_RS08685 at 1930.455 kb on + strand, within PFLU_RS08685 at 1930.610 kb on + strand, within PFLU_RS08685 at 1930.610 kb on + strand, within PFLU_RS08685 at 1930.610 kb on + strand, within PFLU_RS08685 at 1930.742 kb on + strand, within PFLU_RS08685 at 1930.743 kb on - strand, within PFLU_RS08685 at 1930.743 kb on - strand, within PFLU_RS08685 at 1930.760 kb on + strand, within PFLU_RS08685 at 1930.760 kb on + strand, within PFLU_RS08685 at 1930.760 kb on + strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685 at 1930.761 kb on - strand, within PFLU_RS08685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,928,951 + PFLU_RS08670 0.83 +0.1 1,928,951 + PFLU_RS08670 0.83 +0.6 1,928,952 - PFLU_RS08670 0.83 +1.6 1,929,027 + PFLU_RS08670 0.87 -0.7 1,929,027 + PFLU_RS08670 0.87 +0.6 1,929,090 + -0.4 1,929,090 + +0.6 1,929,090 + +1.6 1,929,090 + -0.7 1,929,090 + +1.6 1,929,090 + +0.6 1,929,091 - +1.6 1,929,091 - +1.6 1,929,283 + +0.6 1,929,357 - PFLU_RS08675 0.14 +0.6 1,929,563 + PFLU_RS08675 0.52 -0.7 1,929,563 + PFLU_RS08675 0.52 +0.6 1,929,563 + PFLU_RS08675 0.52 +0.6 1,929,575 + PFLU_RS08675 0.54 +1.6 1,929,575 + PFLU_RS08675 0.54 +1.6 1,929,575 + PFLU_RS08675 0.54 -0.4 1,929,576 - PFLU_RS08675 0.54 +0.1 1,929,576 - PFLU_RS08675 0.54 +0.6 1,929,683 + PFLU_RS08675 0.74 +0.6 1,929,684 - PFLU_RS08675 0.74 -0.4 1,929,737 + PFLU_RS08675 0.84 +2.6 1,929,737 + PFLU_RS08675 0.84 -0.7 1,929,737 + PFLU_RS08675 0.84 +1.6 1,929,737 + PFLU_RS08675 0.84 +0.6 1,929,738 - PFLU_RS08675 0.85 +0.1 1,929,738 - PFLU_RS08675 0.85 +1.6 1,929,738 - PFLU_RS08675 0.85 +0.1 1,929,738 - PFLU_RS08675 0.85 +0.6 1,929,738 - PFLU_RS08675 0.85 +1.6 1,929,738 - PFLU_RS08675 0.85 +3.2 1,929,738 - PFLU_RS08675 0.85 +0.6 1,929,738 - PFLU_RS08675 0.85 +1.6 1,929,738 - PFLU_RS08675 0.85 +1.6 1,929,738 - PFLU_RS08675 0.85 +2.6 1,929,889 + PFLU_RS08680 0.15 +0.1 1,929,889 + PFLU_RS08680 0.15 +1.6 1,929,890 - PFLU_RS08680 0.15 +1.6 1,929,890 - PFLU_RS08680 0.15 +0.6 1,930,409 + PFLU_RS08685 0.11 -0.9 1,930,409 + PFLU_RS08685 0.11 +2.8 1,930,455 + PFLU_RS08685 0.14 +1.6 1,930,455 + PFLU_RS08685 0.14 +1.6 1,930,610 + PFLU_RS08685 0.28 +0.6 1,930,610 + PFLU_RS08685 0.28 -0.9 1,930,610 + PFLU_RS08685 0.28 -0.4 1,930,742 + PFLU_RS08685 0.39 +1.4 1,930,743 - PFLU_RS08685 0.39 +1.0 1,930,743 - PFLU_RS08685 0.39 +0.6 1,930,760 + PFLU_RS08685 0.40 -0.2 1,930,760 + PFLU_RS08685 0.40 -0.1 1,930,760 + PFLU_RS08685 0.40 +1.6 1,930,761 - PFLU_RS08685 0.40 -2.5 1,930,761 - PFLU_RS08685 0.40 -0.9 1,930,761 - PFLU_RS08685 0.40 -0.5 1,930,761 - PFLU_RS08685 0.40 +1.6 1,930,761 - PFLU_RS08685 0.40 +1.6 1,930,761 - PFLU_RS08685 0.40 -2.1 1,930,761 - PFLU_RS08685 0.40 +0.6
Or see this region's nucleotide sequence