Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03260

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03255 and PFLU_RS03260 are separated by 8 nucleotidesPFLU_RS03260 and PFLU_RS03265 are separated by 146 nucleotides PFLU_RS03255: PFLU_RS03255 - multidrug effflux MFS transporter, at 751,651 to 752,844 _RS03255 PFLU_RS03260: PFLU_RS03260 - hypothetical protein, at 752,853 to 753,035 _RS03260 PFLU_RS03265: PFLU_RS03265 - zinc-binding alcohol dehydrogenase family protein, at 753,182 to 754,195 _RS03265 Position (kb) 752 753 754Strain fitness (log2 ratio) -2 -1 0 1 2at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.888 kb on - strand, within PFLU_RS03255at 751.888 kb on - strand, within PFLU_RS03255at 752.038 kb on + strand, within PFLU_RS03255at 752.038 kb on + strand, within PFLU_RS03255at 752.039 kb on - strand, within PFLU_RS03255at 752.039 kb on - strand, within PFLU_RS03255at 752.147 kb on + strand, within PFLU_RS03255at 752.245 kb on + strand, within PFLU_RS03255at 752.272 kb on + strand, within PFLU_RS03255at 752.281 kb on + strand, within PFLU_RS03255at 752.281 kb on + strand, within PFLU_RS03255at 752.282 kb on - strand, within PFLU_RS03255at 752.298 kb on + strand, within PFLU_RS03255at 752.299 kb on - strand, within PFLU_RS03255at 752.299 kb on - strand, within PFLU_RS03255at 752.299 kb on - strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.324 kb on - strand, within PFLU_RS03255at 752.324 kb on - strand, within PFLU_RS03255at 752.381 kb on - strand, within PFLU_RS03255at 752.418 kb on - strand, within PFLU_RS03255at 752.418 kb on - strand, within PFLU_RS03255at 752.486 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.574 kb on + strand, within PFLU_RS03255at 752.574 kb on + strand, within PFLU_RS03255at 752.575 kb on - strand, within PFLU_RS03255at 752.575 kb on - strand, within PFLU_RS03255at 752.575 kb on - strand, within PFLU_RS03255at 752.581 kb on - strand, within PFLU_RS03255at 752.993 kb on + strand, within PFLU_RS03260at 752.993 kb on + strand, within PFLU_RS03260at 752.994 kb on - strand, within PFLU_RS03260at 752.994 kb on - strand, within PFLU_RS03260at 752.994 kb on - strand, within PFLU_RS03260at 752.994 kb on - strand, within PFLU_RS03260at 753.012 kb on + strand, within PFLU_RS03260at 753.022 kb on - strandat 753.022 kb on - strandat 753.052 kb on + strandat 753.052 kb on + strandat 753.079 kb on + strandat 753.080 kb on - strandat 753.080 kb on - strandat 753.080 kb on - strandat 753.080 kb on - strandat 753.080 kb on - strandat 753.080 kb on - strandat 753.081 kb on + strandat 753.081 kb on + strandat 753.081 kb on + strandat 753.081 kb on + strandat 753.081 kb on + strandat 753.081 kb on + strandat 753.081 kb on + strandat 753.082 kb on - strandat 753.082 kb on - strandat 753.082 kb on - strandat 753.082 kb on - strandat 753.082 kb on - strandat 753.082 kb on - strandat 753.082 kb on - strandat 753.091 kb on + strandat 753.091 kb on + strandat 753.092 kb on - strandat 753.092 kb on - strandat 753.092 kb on - strandat 753.103 kb on + strandat 753.104 kb on - strandat 753.104 kb on - strandat 753.128 kb on - strandat 753.128 kb on - strandat 753.155 kb on + strandat 753.155 kb on + strandat 753.384 kb on + strand, within PFLU_RS03265at 753.384 kb on + strand, within PFLU_RS03265at 753.384 kb on + strand, within PFLU_RS03265at 753.384 kb on + strand, within PFLU_RS03265at 753.384 kb on + strand, within PFLU_RS03265at 753.384 kb on + strand, within PFLU_RS03265at 753.385 kb on - strand, within PFLU_RS03265at 753.385 kb on - strand, within PFLU_RS03265at 753.385 kb on - strand, within PFLU_RS03265at 753.385 kb on - strand, within PFLU_RS03265at 753.385 kb on - strand, within PFLU_RS03265at 753.930 kb on + strand, within PFLU_RS03265

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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751,887 + PFLU_RS03255 0.20 +0.5
751,887 + PFLU_RS03255 0.20 +1.0
751,887 + PFLU_RS03255 0.20 +0.6
751,887 + PFLU_RS03255 0.20 +0.0
751,887 + PFLU_RS03255 0.20 -0.5
751,888 - PFLU_RS03255 0.20 +0.4
751,888 - PFLU_RS03255 0.20 +1.2
752,038 + PFLU_RS03255 0.32 +0.4
752,038 + PFLU_RS03255 0.32 +0.3
752,039 - PFLU_RS03255 0.32 +0.9
752,039 - PFLU_RS03255 0.32 +0.9
752,147 + PFLU_RS03255 0.42 +0.1
752,245 + PFLU_RS03255 0.50 +0.1
752,272 + PFLU_RS03255 0.52 -1.0
752,281 + PFLU_RS03255 0.53 +0.9
752,281 + PFLU_RS03255 0.53 -0.2
752,282 - PFLU_RS03255 0.53 +0.8
752,298 + PFLU_RS03255 0.54 +1.2
752,299 - PFLU_RS03255 0.54 -0.2
752,299 - PFLU_RS03255 0.54 +0.8
752,299 - PFLU_RS03255 0.54 +1.3
752,323 + PFLU_RS03255 0.56 -0.4
752,323 + PFLU_RS03255 0.56 -0.7
752,323 + PFLU_RS03255 0.56 -1.6
752,323 + PFLU_RS03255 0.56 -1.2
752,323 + PFLU_RS03255 0.56 -0.2
752,324 - PFLU_RS03255 0.56 +0.4
752,324 - PFLU_RS03255 0.56 +2.3
752,381 - PFLU_RS03255 0.61 -2.6
752,418 - PFLU_RS03255 0.64 +0.8
752,418 - PFLU_RS03255 0.64 +1.0
752,486 + PFLU_RS03255 0.70 -0.1
752,494 + PFLU_RS03255 0.71 -0.7
752,494 + PFLU_RS03255 0.71 +1.0
752,494 + PFLU_RS03255 0.71 -1.6
752,494 + PFLU_RS03255 0.71 +0.1
752,574 + PFLU_RS03255 0.77 -1.3
752,574 + PFLU_RS03255 0.77 -0.0
752,575 - PFLU_RS03255 0.77 -0.7
752,575 - PFLU_RS03255 0.77 +1.8
752,575 - PFLU_RS03255 0.77 -0.6
752,581 - PFLU_RS03255 0.78 -1.8
752,993 + PFLU_RS03260 0.77 +0.2
752,993 + PFLU_RS03260 0.77 +1.6
752,994 - PFLU_RS03260 0.77 +1.2
752,994 - PFLU_RS03260 0.77 +0.4
752,994 - PFLU_RS03260 0.77 -1.4
752,994 - PFLU_RS03260 0.77 +0.2
753,012 + PFLU_RS03260 0.87 -1.7
753,022 - -0.3
753,022 - +0.0
753,052 + +2.2
753,052 + +0.4
753,079 + +1.1
753,080 - -1.2
753,080 - -0.5
753,080 - +0.5
753,080 - +0.4
753,080 - -0.0
753,080 - +0.4
753,081 + +1.6
753,081 + +0.3
753,081 + +0.2
753,081 + +2.3
753,081 + +0.5
753,081 + -0.0
753,081 + +0.9
753,082 - -0.6
753,082 - +0.2
753,082 - +0.5
753,082 - +0.7
753,082 - -1.2
753,082 - -1.0
753,082 - +1.2
753,091 + +0.1
753,091 + +0.5
753,092 - -1.6
753,092 - +0.3
753,092 - +1.3
753,103 + -0.8
753,104 - -0.9
753,104 - -1.1
753,128 - -0.1
753,128 - +0.9
753,155 + +0.9
753,155 + -0.2
753,384 + PFLU_RS03265 0.20 -0.0
753,384 + PFLU_RS03265 0.20 +0.0
753,384 + PFLU_RS03265 0.20 -0.1
753,384 + PFLU_RS03265 0.20 -1.0
753,384 + PFLU_RS03265 0.20 +0.5
753,384 + PFLU_RS03265 0.20 -0.0
753,385 - PFLU_RS03265 0.20 +0.6
753,385 - PFLU_RS03265 0.20 +0.5
753,385 - PFLU_RS03265 0.20 -1.1
753,385 - PFLU_RS03265 0.20 +1.7
753,385 - PFLU_RS03265 0.20 -1.0
753,930 + PFLU_RS03265 0.74 +0.0

Or see this region's nucleotide sequence