Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01900

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01885 and PFLU_RS01890 are separated by 10 nucleotidesPFLU_RS01890 and PFLU_RS01895 are separated by 25 nucleotidesPFLU_RS01895 and PFLU_RS01900 are separated by 2 nucleotidesPFLU_RS01900 and PFLU_RS01905 are separated by 41 nucleotides PFLU_RS01885: PFLU_RS01885 - Sec-independent protein translocase subunit TatB, at 426,447 to 426,851 _RS01885 PFLU_RS01890: PFLU_RS01890 - twin-arginine translocase TatA/TatE family subunit, at 426,862 to 427,140 _RS01890 PFLU_RS01895: PFLU_RS01895 - phosphoribosyl-ATP diphosphatase, at 427,166 to 427,498 _RS01895 PFLU_RS01900: PFLU_RS01900 - phosphoribosyl-AMP cyclohydrolase, at 427,501 to 427,893 _RS01900 PFLU_RS01905: PFLU_RS01905 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 427,935 to 429,539 _RS01905 Position (kb) 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.650 kb on + strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.651 kb on - strand, within PFLU_RS01885at 426.795 kb on + strand, within PFLU_RS01885at 426.842 kb on + strandat 426.852 kb on + strandat 426.915 kb on + strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 426.916 kb on - strand, within PFLU_RS01890at 427.085 kb on - strand, within PFLU_RS01890at 427.090 kb on + strand, within PFLU_RS01890at 427.090 kb on + strand, within PFLU_RS01890at 427.090 kb on + strand, within PFLU_RS01890at 427.091 kb on - strand, within PFLU_RS01890at 427.164 kb on - strandat 427.164 kb on - strandat 427.164 kb on - strandat 427.306 kb on - strand, within PFLU_RS01895at 427.306 kb on - strand, within PFLU_RS01895at 427.414 kb on - strand, within PFLU_RS01895at 427.428 kb on + strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.429 kb on - strand, within PFLU_RS01895at 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.517 kb on + strandat 427.518 kb on - strandat 427.518 kb on - strandat 427.583 kb on + strand, within PFLU_RS01900at 427.583 kb on + strand, within PFLU_RS01900at 427.583 kb on + strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.584 kb on - strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.745 kb on + strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.746 kb on - strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.826 kb on + strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.827 kb on - strand, within PFLU_RS01900at 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.921 kb on + strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.922 kb on - strandat 427.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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426,650 + PFLU_RS01885 0.50 +2.3
426,650 + PFLU_RS01885 0.50 +0.2
426,650 + PFLU_RS01885 0.50 +2.9
426,650 + PFLU_RS01885 0.50 +1.7
426,650 + PFLU_RS01885 0.50 +0.7
426,650 + PFLU_RS01885 0.50 -0.5
426,650 + PFLU_RS01885 0.50 +1.7
426,650 + PFLU_RS01885 0.50 -1.3
426,651 - PFLU_RS01885 0.50 +0.9
426,651 - PFLU_RS01885 0.50 +1.3
426,651 - PFLU_RS01885 0.50 +0.3
426,651 - PFLU_RS01885 0.50 +0.7
426,651 - PFLU_RS01885 0.50 +0.8
426,651 - PFLU_RS01885 0.50 +0.1
426,651 - PFLU_RS01885 0.50 -1.2
426,651 - PFLU_RS01885 0.50 +1.8
426,651 - PFLU_RS01885 0.50 +2.0
426,795 + PFLU_RS01885 0.86 +2.3
426,842 + +1.1
426,852 + -0.3
426,915 + PFLU_RS01890 0.19 -1.2
426,916 - PFLU_RS01890 0.19 +0.5
426,916 - PFLU_RS01890 0.19 -0.6
427,085 - PFLU_RS01890 0.80 +1.8
427,090 + PFLU_RS01890 0.82 -0.5
427,090 + PFLU_RS01890 0.82 +2.0
427,090 + PFLU_RS01890 0.82 -0.3
427,091 - PFLU_RS01890 0.82 -1.4
427,164 - -1.4
427,164 - -0.2
427,164 - +0.6
427,306 - PFLU_RS01895 0.42 -1.9
427,306 - PFLU_RS01895 0.42 -1.7
427,414 - PFLU_RS01895 0.74 -2.9
427,428 + PFLU_RS01895 0.79 -0.9
427,429 - PFLU_RS01895 0.79 -2.5
427,429 - PFLU_RS01895 0.79 -2.0
427,429 - PFLU_RS01895 0.79 -1.8
427,517 + -1.2
427,517 + -0.2
427,517 + -2.9
427,517 + -1.7
427,517 + +1.0
427,517 + -2.3
427,518 - -1.5
427,518 - -2.4
427,583 + PFLU_RS01900 0.21 -2.7
427,583 + PFLU_RS01900 0.21 -0.0
427,583 + PFLU_RS01900 0.21 -0.9
427,584 - PFLU_RS01900 0.21 -1.8
427,584 - PFLU_RS01900 0.21 -3.3
427,745 + PFLU_RS01900 0.62 -1.8
427,745 + PFLU_RS01900 0.62 -3.3
427,745 + PFLU_RS01900 0.62 -2.2
427,745 + PFLU_RS01900 0.62 +0.2
427,745 + PFLU_RS01900 0.62 -3.0
427,745 + PFLU_RS01900 0.62 -3.3
427,745 + PFLU_RS01900 0.62 -2.4
427,745 + PFLU_RS01900 0.62 -2.5
427,745 + PFLU_RS01900 0.62 -2.7
427,745 + PFLU_RS01900 0.62 -2.5
427,745 + PFLU_RS01900 0.62 -0.0
427,745 + PFLU_RS01900 0.62 -1.3
427,745 + PFLU_RS01900 0.62 -1.6
427,745 + PFLU_RS01900 0.62 -3.1
427,746 - PFLU_RS01900 0.62 -1.8
427,746 - PFLU_RS01900 0.62 -2.0
427,746 - PFLU_RS01900 0.62 -1.8
427,746 - PFLU_RS01900 0.62 -3.4
427,746 - PFLU_RS01900 0.62 -1.2
427,826 + PFLU_RS01900 0.83 -2.0
427,826 + PFLU_RS01900 0.83 -1.8
427,826 + PFLU_RS01900 0.83 -2.3
427,826 + PFLU_RS01900 0.83 -1.2
427,826 + PFLU_RS01900 0.83 -2.6
427,826 + PFLU_RS01900 0.83 -3.3
427,827 - PFLU_RS01900 0.83 -0.2
427,827 - PFLU_RS01900 0.83 -0.5
427,921 + -1.0
427,921 + +0.4
427,921 + -0.0
427,921 + -0.1
427,921 + -0.0
427,921 + +1.0
427,921 + -0.0
427,921 + -0.1
427,921 + +1.0
427,921 + +1.3
427,921 + +0.8
427,921 + -2.1
427,921 + -0.1
427,921 + +0.7
427,921 + -1.5
427,921 + +0.9
427,921 + +0.4
427,921 + -1.5
427,921 + +0.3
427,921 + -0.7
427,921 + +1.0
427,921 + +0.1
427,921 + +0.9
427,922 - +1.0
427,922 - -0.0
427,922 - -0.5
427,922 - +0.2
427,922 - -0.6
427,922 - +1.2
427,922 - +0.6
427,922 - +2.0
427,922 - +1.3
427,922 - +0.3
427,922 - -0.6
427,922 - +0.2
427,922 - +0.1
427,922 - +1.4
427,924 - -0.7

Or see this region's nucleotide sequence