Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00620

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00615 and PFLU_RS00620 overlap by 4 nucleotidesPFLU_RS00620 and PFLU_RS00625 overlap by 14 nucleotides PFLU_RS00615: PFLU_RS00615 - non-ribosomal peptide synthetase, at 128,023 to 131,394 _RS00615 PFLU_RS00620: PFLU_RS00620 - hypothetical protein, at 131,391 to 132,338 _RS00620 PFLU_RS00625: PFLU_RS00625 - DUF3050 domain-containing protein, at 132,325 to 133,092 _RS00625 Position (kb) 131 132 133Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 130.423 kb on + strand, within PFLU_RS00615at 130.423 kb on + strand, within PFLU_RS00615at 130.423 kb on + strand, within PFLU_RS00615at 130.424 kb on - strand, within PFLU_RS00615at 130.424 kb on - strand, within PFLU_RS00615at 130.592 kb on - strand, within PFLU_RS00615at 130.661 kb on + strand, within PFLU_RS00615at 130.661 kb on + strand, within PFLU_RS00615at 130.661 kb on + strand, within PFLU_RS00615at 130.661 kb on + strand, within PFLU_RS00615at 130.662 kb on - strand, within PFLU_RS00615at 130.662 kb on - strand, within PFLU_RS00615at 130.662 kb on - strand, within PFLU_RS00615at 130.662 kb on - strand, within PFLU_RS00615at 130.700 kb on + strand, within PFLU_RS00615at 130.700 kb on + strand, within PFLU_RS00615at 130.700 kb on + strand, within PFLU_RS00615at 130.701 kb on - strand, within PFLU_RS00615at 130.701 kb on - strand, within PFLU_RS00615at 130.701 kb on - strand, within PFLU_RS00615at 130.938 kb on + strand, within PFLU_RS00615at 131.021 kb on + strand, within PFLU_RS00615at 131.021 kb on + strand, within PFLU_RS00615at 131.021 kb on + strand, within PFLU_RS00615at 131.022 kb on - strand, within PFLU_RS00615at 131.166 kb on - strandat 131.180 kb on - strandat 131.180 kb on - strandat 131.321 kb on + strandat 131.419 kb on + strandat 131.419 kb on + strandat 131.420 kb on - strandat 131.420 kb on - strandat 131.535 kb on + strand, within PFLU_RS00620at 131.535 kb on + strand, within PFLU_RS00620at 131.536 kb on - strand, within PFLU_RS00620at 131.629 kb on + strand, within PFLU_RS00620at 131.629 kb on + strand, within PFLU_RS00620at 131.629 kb on + strand, within PFLU_RS00620at 131.698 kb on + strand, within PFLU_RS00620at 131.698 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 132.004 kb on + strand, within PFLU_RS00620at 132.004 kb on + strand, within PFLU_RS00620at 132.005 kb on - strand, within PFLU_RS00620at 132.005 kb on - strand, within PFLU_RS00620at 132.005 kb on - strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.127 kb on - strand, within PFLU_RS00620at 132.143 kb on + strand, within PFLU_RS00620at 132.145 kb on + strand, within PFLU_RS00620at 132.145 kb on + strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.236 kb on - strand, within PFLU_RS00620at 132.332 kb on + strandat 132.332 kb on + strandat 132.333 kb on - strandat 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.464 kb on - strand, within PFLU_RS00625at 132.522 kb on - strand, within PFLU_RS00625at 132.535 kb on - strand, within PFLU_RS00625at 132.562 kb on - strand, within PFLU_RS00625at 132.595 kb on + strand, within PFLU_RS00625at 132.649 kb on + strand, within PFLU_RS00625at 132.697 kb on + strand, within PFLU_RS00625at 132.697 kb on + strand, within PFLU_RS00625at 132.698 kb on - strand, within PFLU_RS00625at 132.750 kb on + strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.753 kb on + strand, within PFLU_RS00625at 132.753 kb on + strand, within PFLU_RS00625at 132.753 kb on + strand, within PFLU_RS00625at 132.754 kb on - strand, within PFLU_RS00625at 132.754 kb on - strand, within PFLU_RS00625at 132.807 kb on - strand, within PFLU_RS00625at 132.825 kb on + strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.827 kb on + strand, within PFLU_RS00625at 132.828 kb on - strand, within PFLU_RS00625at 132.828 kb on - strand, within PFLU_RS00625at 132.828 kb on - strand, within PFLU_RS00625at 132.985 kb on + strand, within PFLU_RS00625at 132.985 kb on + strand, within PFLU_RS00625at 132.985 kb on + strand, within PFLU_RS00625at 132.986 kb on - strand, within PFLU_RS00625at 133.103 kb on + strandat 133.104 kb on - strandat 133.105 kb on + strandat 133.163 kb on + strandat 133.163 kb on + strandat 133.163 kb on + strandat 133.164 kb on - strandat 133.198 kb on - strandat 133.248 kb on - strandat 133.251 kb on - strandat 133.277 kb on + strandat 133.308 kb on + strandat 133.309 kb on - strandat 133.322 kb on - strandat 133.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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130,423 + PFLU_RS00615 0.71 +0.1
130,423 + PFLU_RS00615 0.71 +0.4
130,423 + PFLU_RS00615 0.71 -0.4
130,424 - PFLU_RS00615 0.71 +0.3
130,424 - PFLU_RS00615 0.71 -0.2
130,592 - PFLU_RS00615 0.76 +1.4
130,661 + PFLU_RS00615 0.78 -0.0
130,661 + PFLU_RS00615 0.78 -0.8
130,661 + PFLU_RS00615 0.78 +0.2
130,661 + PFLU_RS00615 0.78 +0.3
130,662 - PFLU_RS00615 0.78 -0.1
130,662 - PFLU_RS00615 0.78 +1.4
130,662 - PFLU_RS00615 0.78 +0.9
130,662 - PFLU_RS00615 0.78 +0.4
130,700 + PFLU_RS00615 0.79 +0.1
130,700 + PFLU_RS00615 0.79 +1.0
130,700 + PFLU_RS00615 0.79 -0.7
130,701 - PFLU_RS00615 0.79 -0.0
130,701 - PFLU_RS00615 0.79 -0.9
130,701 - PFLU_RS00615 0.79 +0.7
130,938 + PFLU_RS00615 0.86 +1.2
131,021 + PFLU_RS00615 0.89 -0.6
131,021 + PFLU_RS00615 0.89 -0.4
131,021 + PFLU_RS00615 0.89 +0.4
131,022 - PFLU_RS00615 0.89 -0.8
131,166 - +1.9
131,180 - +0.5
131,180 - -0.7
131,321 + +1.4
131,419 + +1.9
131,419 + +1.2
131,420 - -0.2
131,420 - -0.9
131,535 + PFLU_RS00620 0.15 +0.4
131,535 + PFLU_RS00620 0.15 +1.1
131,536 - PFLU_RS00620 0.15 +0.6
131,629 + PFLU_RS00620 0.25 -0.0
131,629 + PFLU_RS00620 0.25 +0.9
131,629 + PFLU_RS00620 0.25 -0.1
131,698 + PFLU_RS00620 0.32 -1.0
131,698 + PFLU_RS00620 0.32 +0.5
131,949 + PFLU_RS00620 0.59 +1.0
131,949 + PFLU_RS00620 0.59 -1.9
131,949 + PFLU_RS00620 0.59 +0.7
131,949 + PFLU_RS00620 0.59 -0.2
131,950 - PFLU_RS00620 0.59 -0.2
131,950 - PFLU_RS00620 0.59 -0.9
131,950 - PFLU_RS00620 0.59 +0.7
131,950 - PFLU_RS00620 0.59 -0.1
132,004 + PFLU_RS00620 0.65 -2.3
132,004 + PFLU_RS00620 0.65 -0.4
132,005 - PFLU_RS00620 0.65 -0.2
132,005 - PFLU_RS00620 0.65 +0.4
132,005 - PFLU_RS00620 0.65 +0.0
132,126 + PFLU_RS00620 0.78 -1.6
132,126 + PFLU_RS00620 0.78 -1.0
132,126 + PFLU_RS00620 0.78 -0.1
132,126 + PFLU_RS00620 0.78 -0.9
132,127 - PFLU_RS00620 0.78 +1.1
132,143 + PFLU_RS00620 0.79 +1.2
132,145 + PFLU_RS00620 0.80 -0.6
132,145 + PFLU_RS00620 0.80 +0.4
132,146 - PFLU_RS00620 0.80 +0.5
132,146 - PFLU_RS00620 0.80 +1.0
132,146 - PFLU_RS00620 0.80 +0.9
132,146 - PFLU_RS00620 0.80 +2.4
132,235 + PFLU_RS00620 0.89 -1.2
132,235 + PFLU_RS00620 0.89 +0.3
132,235 + PFLU_RS00620 0.89 -2.0
132,235 + PFLU_RS00620 0.89 -0.1
132,235 + PFLU_RS00620 0.89 -1.5
132,235 + PFLU_RS00620 0.89 +1.6
132,236 - PFLU_RS00620 0.89 +0.2
132,332 + -0.1
132,332 + -0.4
132,333 - -0.1
132,463 + PFLU_RS00625 0.18 +0.7
132,463 + PFLU_RS00625 0.18 -0.4
132,463 + PFLU_RS00625 0.18 -0.1
132,463 + PFLU_RS00625 0.18 -1.3
132,463 + PFLU_RS00625 0.18 -0.1
132,463 + PFLU_RS00625 0.18 +0.6
132,463 + PFLU_RS00625 0.18 +0.7
132,464 - PFLU_RS00625 0.18 +0.4
132,522 - PFLU_RS00625 0.26 -0.5
132,535 - PFLU_RS00625 0.27 +0.3
132,562 - PFLU_RS00625 0.31 +0.5
132,595 + PFLU_RS00625 0.35 -0.5
132,649 + PFLU_RS00625 0.42 -0.6
132,697 + PFLU_RS00625 0.48 +0.2
132,697 + PFLU_RS00625 0.48 -0.2
132,698 - PFLU_RS00625 0.49 -1.2
132,750 + PFLU_RS00625 0.55 +0.8
132,751 - PFLU_RS00625 0.55 +0.3
132,751 - PFLU_RS00625 0.55 +1.7
132,751 - PFLU_RS00625 0.55 +0.1
132,751 - PFLU_RS00625 0.55 -0.9
132,753 + PFLU_RS00625 0.56 +1.2
132,753 + PFLU_RS00625 0.56 +0.5
132,753 + PFLU_RS00625 0.56 +1.1
132,754 - PFLU_RS00625 0.56 -1.3
132,754 - PFLU_RS00625 0.56 +1.2
132,807 - PFLU_RS00625 0.63 +0.7
132,825 + PFLU_RS00625 0.65 +0.7
132,826 - PFLU_RS00625 0.65 -1.8
132,826 - PFLU_RS00625 0.65 -0.4
132,826 - PFLU_RS00625 0.65 +0.2
132,826 - PFLU_RS00625 0.65 +1.7
132,826 - PFLU_RS00625 0.65 -1.6
132,827 + PFLU_RS00625 0.65 +1.6
132,828 - PFLU_RS00625 0.65 +0.6
132,828 - PFLU_RS00625 0.65 +0.4
132,828 - PFLU_RS00625 0.65 +0.8
132,985 + PFLU_RS00625 0.86 +1.5
132,985 + PFLU_RS00625 0.86 +0.7
132,985 + PFLU_RS00625 0.86 +1.4
132,986 - PFLU_RS00625 0.86 +2.0
133,103 + -0.2
133,104 - -1.3
133,105 + +0.6
133,163 + -0.6
133,163 + -0.3
133,163 + -0.1
133,164 - -0.4
133,198 - +0.6
133,248 - -0.8
133,251 - -2.9
133,277 + -0.2
133,308 + -0.2
133,309 - +0.6
133,322 - -0.6
133,334 - +0.1

Or see this region's nucleotide sequence