Strain Fitness in Pseudomonas sp. S08-1 around OH686_17685

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_17670 and OH686_17675 overlap by 21 nucleotidesOH686_17675 and OH686_17680 are separated by 25 nucleotidesOH686_17680 and OH686_17685 are separated by 127 nucleotidesOH686_17685 and OH686_17690 are separated by 10 nucleotidesOH686_17690 and OH686_17695 overlap by 4 nucleotidesOH686_17695 and OH686_17700 are separated by 32 nucleotides OH686_17670: OH686_17670 - hypothetical protein, at 3,690,160 to 3,691,065 _17670 OH686_17675: OH686_17675 - hypothetical protein' product='hypothetical protein, at 3,691,045 to 3,691,284 _17675 OH686_17680: OH686_17680 - MutT/Nudix family protein, at 3,691,310 to 3,691,855 _17680 OH686_17685: OH686_17685 - Uncharacterized Nudix hydrolase NudL, at 3,691,983 to 3,692,591 _17685 OH686_17690: OH686_17690 - Carbonic anhydrase-like protein, at 3,692,602 to 3,693,126 _17690 OH686_17695: OH686_17695 - hypothetical protein, at 3,693,123 to 3,693,329 _17695 OH686_17700: OH686_17700 - phosphoribosylglycinamide formyltransferase 2, at 3,693,362 to 3,694,543 _17700 Position (kb) 3691 3692 3693Strain fitness (log2 ratio) -2 -1 0 1 2at 3691.278 kb on + strandat 3691.383 kb on + strand, within OH686_17680at 3691.383 kb on + strand, within OH686_17680at 3691.383 kb on + strand, within OH686_17680at 3691.384 kb on - strand, within OH686_17680at 3691.384 kb on - strand, within OH686_17680at 3691.384 kb on - strand, within OH686_17680at 3691.384 kb on - strand, within OH686_17680at 3691.396 kb on + strand, within OH686_17680at 3691.396 kb on + strand, within OH686_17680at 3691.396 kb on + strand, within OH686_17680at 3691.396 kb on + strand, within OH686_17680at 3691.396 kb on + strand, within OH686_17680at 3691.397 kb on - strand, within OH686_17680at 3691.397 kb on - strand, within OH686_17680at 3691.418 kb on + strand, within OH686_17680at 3691.418 kb on + strand, within OH686_17680at 3691.419 kb on - strand, within OH686_17680at 3691.419 kb on - strand, within OH686_17680at 3691.435 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.457 kb on + strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.458 kb on - strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.521 kb on + strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.522 kb on - strand, within OH686_17680at 3691.556 kb on - strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.557 kb on + strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.558 kb on - strand, within OH686_17680at 3691.756 kb on - strand, within OH686_17680at 3692.328 kb on + strand, within OH686_17685at 3692.328 kb on + strand, within OH686_17685at 3692.328 kb on + strand, within OH686_17685at 3692.328 kb on + strand, within OH686_17685at 3692.329 kb on - strand, within OH686_17685at 3692.329 kb on - strand, within OH686_17685at 3692.329 kb on - strand, within OH686_17685at 3692.431 kb on - strand, within OH686_17685at 3692.431 kb on - strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.448 kb on + strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.449 kb on - strand, within OH686_17685at 3692.460 kb on + strand, within OH686_17685at 3692.460 kb on + strand, within OH686_17685at 3692.461 kb on - strand, within OH686_17685at 3692.461 kb on - strand, within OH686_17685at 3692.466 kb on + strand, within OH686_17685at 3692.467 kb on - strand, within OH686_17685at 3692.467 kb on - strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.475 kb on + strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.476 kb on - strand, within OH686_17685at 3692.597 kb on + strandat 3692.598 kb on - strandat 3692.608 kb on + strandat 3692.609 kb on - strandat 3692.609 kb on - strandat 3692.609 kb on - strandat 3692.878 kb on + strand, within OH686_17690at 3692.878 kb on + strand, within OH686_17690at 3692.878 kb on + strand, within OH686_17690at 3692.878 kb on + strand, within OH686_17690at 3692.879 kb on - strand, within OH686_17690at 3692.879 kb on - strand, within OH686_17690at 3692.879 kb on - strand, within OH686_17690at 3692.879 kb on - strand, within OH686_17690at 3692.895 kb on + strand, within OH686_17690at 3692.896 kb on - strand, within OH686_17690at 3692.896 kb on - strand, within OH686_17690at 3692.896 kb on - strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.932 kb on + strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3692.933 kb on - strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.073 kb on + strand, within OH686_17690at 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.074 kb on - strandat 3693.370 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
3,691,278 + +0.4
3,691,383 + OH686_17680 0.13 +0.8
3,691,383 + OH686_17680 0.13 +0.4
3,691,383 + OH686_17680 0.13 -0.1
3,691,384 - OH686_17680 0.14 -0.0
3,691,384 - OH686_17680 0.14 +0.2
3,691,384 - OH686_17680 0.14 -0.3
3,691,384 - OH686_17680 0.14 +0.1
3,691,396 + OH686_17680 0.16 -1.4
3,691,396 + OH686_17680 0.16 +0.5
3,691,396 + OH686_17680 0.16 +0.7
3,691,396 + OH686_17680 0.16 -1.3
3,691,396 + OH686_17680 0.16 -0.4
3,691,397 - OH686_17680 0.16 -0.5
3,691,397 - OH686_17680 0.16 -0.0
3,691,418 + OH686_17680 0.20 -0.5
3,691,418 + OH686_17680 0.20 +0.5
3,691,419 - OH686_17680 0.20 +0.2
3,691,419 - OH686_17680 0.20 -0.6
3,691,435 + OH686_17680 0.23 -0.8
3,691,457 + OH686_17680 0.27 +0.5
3,691,457 + OH686_17680 0.27 -0.3
3,691,457 + OH686_17680 0.27 +0.7
3,691,457 + OH686_17680 0.27 -0.5
3,691,457 + OH686_17680 0.27 +0.2
3,691,457 + OH686_17680 0.27 -0.6
3,691,457 + OH686_17680 0.27 +1.4
3,691,457 + OH686_17680 0.27 -0.3
3,691,458 - OH686_17680 0.27 -0.5
3,691,458 - OH686_17680 0.27 +0.3
3,691,458 - OH686_17680 0.27 +0.3
3,691,458 - OH686_17680 0.27 -0.7
3,691,458 - OH686_17680 0.27 -1.1
3,691,458 - OH686_17680 0.27 -0.3
3,691,458 - OH686_17680 0.27 +0.1
3,691,458 - OH686_17680 0.27 -0.1
3,691,521 + OH686_17680 0.39 +0.2
3,691,521 + OH686_17680 0.39 +0.5
3,691,521 + OH686_17680 0.39 -0.6
3,691,521 + OH686_17680 0.39 -0.5
3,691,521 + OH686_17680 0.39 -0.2
3,691,521 + OH686_17680 0.39 +0.8
3,691,521 + OH686_17680 0.39 -0.2
3,691,521 + OH686_17680 0.39 -0.8
3,691,521 + OH686_17680 0.39 -0.1
3,691,521 + OH686_17680 0.39 -0.3
3,691,522 - OH686_17680 0.39 +1.8
3,691,522 - OH686_17680 0.39 +0.4
3,691,522 - OH686_17680 0.39 +0.4
3,691,522 - OH686_17680 0.39 -0.0
3,691,522 - OH686_17680 0.39 -0.4
3,691,522 - OH686_17680 0.39 -0.1
3,691,522 - OH686_17680 0.39 -1.0
3,691,522 - OH686_17680 0.39 +0.0
3,691,522 - OH686_17680 0.39 -0.6
3,691,522 - OH686_17680 0.39 +0.4
3,691,522 - OH686_17680 0.39 +0.5
3,691,522 - OH686_17680 0.39 +0.1
3,691,556 - OH686_17680 0.45 -2.2
3,691,557 + OH686_17680 0.45 -0.0
3,691,557 + OH686_17680 0.45 +0.2
3,691,557 + OH686_17680 0.45 -0.6
3,691,557 + OH686_17680 0.45 +0.6
3,691,557 + OH686_17680 0.45 +0.6
3,691,557 + OH686_17680 0.45 +0.1
3,691,557 + OH686_17680 0.45 -1.0
3,691,557 + OH686_17680 0.45 -0.3
3,691,557 + OH686_17680 0.45 -0.7
3,691,557 + OH686_17680 0.45 -0.2
3,691,557 + OH686_17680 0.45 -0.4
3,691,557 + OH686_17680 0.45 +0.1
3,691,557 + OH686_17680 0.45 -0.8
3,691,558 - OH686_17680 0.45 -0.9
3,691,558 - OH686_17680 0.45 -0.6
3,691,558 - OH686_17680 0.45 +0.6
3,691,558 - OH686_17680 0.45 -0.0
3,691,558 - OH686_17680 0.45 -0.2
3,691,558 - OH686_17680 0.45 -0.3
3,691,558 - OH686_17680 0.45 +0.1
3,691,558 - OH686_17680 0.45 +0.2
3,691,558 - OH686_17680 0.45 +0.0
3,691,558 - OH686_17680 0.45 -0.6
3,691,558 - OH686_17680 0.45 -0.7
3,691,558 - OH686_17680 0.45 +0.3
3,691,558 - OH686_17680 0.45 +0.3
3,691,756 - OH686_17680 0.82 +0.5
3,692,328 + OH686_17685 0.57 -0.0
3,692,328 + OH686_17685 0.57 -0.1
3,692,328 + OH686_17685 0.57 +0.1
3,692,328 + OH686_17685 0.57 +0.4
3,692,329 - OH686_17685 0.57 -1.2
3,692,329 - OH686_17685 0.57 -0.2
3,692,329 - OH686_17685 0.57 -0.4
3,692,431 - OH686_17685 0.74 -1.7
3,692,431 - OH686_17685 0.74 -1.3
3,692,448 + OH686_17685 0.76 -1.4
3,692,448 + OH686_17685 0.76 +0.6
3,692,448 + OH686_17685 0.76 +1.2
3,692,448 + OH686_17685 0.76 +0.7
3,692,448 + OH686_17685 0.76 +1.5
3,692,448 + OH686_17685 0.76 +0.2
3,692,448 + OH686_17685 0.76 -0.7
3,692,448 + OH686_17685 0.76 +0.5
3,692,449 - OH686_17685 0.77 -0.8
3,692,449 - OH686_17685 0.77 -0.4
3,692,449 - OH686_17685 0.77 +0.6
3,692,449 - OH686_17685 0.77 +0.4
3,692,449 - OH686_17685 0.77 -0.3
3,692,449 - OH686_17685 0.77 -0.2
3,692,449 - OH686_17685 0.77 +1.0
3,692,449 - OH686_17685 0.77 +0.5
3,692,460 + OH686_17685 0.78 +0.4
3,692,460 + OH686_17685 0.78 +0.8
3,692,461 - OH686_17685 0.78 -0.1
3,692,461 - OH686_17685 0.78 +0.9
3,692,466 + OH686_17685 0.79 -1.2
3,692,467 - OH686_17685 0.79 +0.7
3,692,467 - OH686_17685 0.79 -0.4
3,692,475 + OH686_17685 0.81 +1.0
3,692,475 + OH686_17685 0.81 +0.6
3,692,475 + OH686_17685 0.81 +0.2
3,692,475 + OH686_17685 0.81 -0.1
3,692,475 + OH686_17685 0.81 -0.8
3,692,475 + OH686_17685 0.81 +0.5
3,692,475 + OH686_17685 0.81 -0.2
3,692,476 - OH686_17685 0.81 +0.2
3,692,476 - OH686_17685 0.81 -1.4
3,692,476 - OH686_17685 0.81 -0.1
3,692,476 - OH686_17685 0.81 +0.3
3,692,476 - OH686_17685 0.81 +0.1
3,692,476 - OH686_17685 0.81 +0.6
3,692,476 - OH686_17685 0.81 -0.2
3,692,597 + -0.1
3,692,598 - -0.0
3,692,608 + +1.1
3,692,609 - -0.2
3,692,609 - -0.9
3,692,609 - -0.3
3,692,878 + OH686_17690 0.53 +1.4
3,692,878 + OH686_17690 0.53 -1.5
3,692,878 + OH686_17690 0.53 -0.4
3,692,878 + OH686_17690 0.53 +0.3
3,692,879 - OH686_17690 0.53 -0.2
3,692,879 - OH686_17690 0.53 -0.2
3,692,879 - OH686_17690 0.53 -0.4
3,692,879 - OH686_17690 0.53 +0.8
3,692,895 + OH686_17690 0.56 +0.3
3,692,896 - OH686_17690 0.56 -0.0
3,692,896 - OH686_17690 0.56 -0.5
3,692,896 - OH686_17690 0.56 +0.3
3,692,932 + OH686_17690 0.63 -0.2
3,692,932 + OH686_17690 0.63 +0.1
3,692,932 + OH686_17690 0.63 +0.2
3,692,932 + OH686_17690 0.63 -0.1
3,692,932 + OH686_17690 0.63 +0.6
3,692,932 + OH686_17690 0.63 +0.7
3,692,932 + OH686_17690 0.63 +0.4
3,692,932 + OH686_17690 0.63 -0.1
3,692,932 + OH686_17690 0.63 -1.0
3,692,933 - OH686_17690 0.63 -0.3
3,692,933 - OH686_17690 0.63 -0.2
3,692,933 - OH686_17690 0.63 -0.4
3,692,933 - OH686_17690 0.63 +0.8
3,692,933 - OH686_17690 0.63 +0.3
3,692,933 - OH686_17690 0.63 +1.0
3,692,933 - OH686_17690 0.63 +0.0
3,692,933 - OH686_17690 0.63 -0.1
3,692,933 - OH686_17690 0.63 -0.0
3,692,933 - OH686_17690 0.63 -0.3
3,693,073 + OH686_17690 0.90 +0.8
3,693,073 + OH686_17690 0.90 -0.0
3,693,073 + OH686_17690 0.90 +0.0
3,693,073 + OH686_17690 0.90 +0.4
3,693,073 + OH686_17690 0.90 +0.3
3,693,073 + OH686_17690 0.90 -0.4
3,693,073 + OH686_17690 0.90 -0.0
3,693,073 + OH686_17690 0.90 -0.0
3,693,073 + OH686_17690 0.90 +0.9
3,693,073 + OH686_17690 0.90 -1.0
3,693,073 + OH686_17690 0.90 +0.8
3,693,073 + OH686_17690 0.90 -0.2
3,693,074 - +0.1
3,693,074 - +0.4
3,693,074 - +0.9
3,693,074 - +0.1
3,693,074 - -0.2
3,693,074 - +0.2
3,693,074 - -0.7
3,693,074 - -0.8
3,693,074 - +1.2
3,693,074 - +0.5
3,693,074 - +0.2
3,693,074 - -0.2
3,693,370 + +0.5

Or see this region's nucleotide sequence