Strain Fitness in Pseudomonas sp. S08-1 around OH686_13915

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13910 and OH686_13915 overlap by 4 nucleotidesOH686_13915 and OH686_13920 are separated by 121 nucleotidesOH686_13920 and OH686_13925 are separated by 185 nucleotides OH686_13910: OH686_13910 - Uncharacterized protein EC-HemX, at 2,911,049 to 2,912,194 _13910 OH686_13915: OH686_13915 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 2,912,191 to 2,913,423 _13915 OH686_13920: OH686_13920 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 2,913,545 to 2,914,036 _13920 OH686_13925: OH686_13925 - Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD, at 2,914,222 to 2,914,698 _13925 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2911.214 kb on + strand, within OH686_13910at 2911.215 kb on - strand, within OH686_13910at 2911.215 kb on - strand, within OH686_13910at 2911.215 kb on - strand, within OH686_13910at 2911.215 kb on - strand, within OH686_13910at 2911.546 kb on + strand, within OH686_13910at 2911.547 kb on - strand, within OH686_13910at 2911.547 kb on - strand, within OH686_13910at 2911.547 kb on - strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.712 kb on + strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.713 kb on - strand, within OH686_13910at 2911.796 kb on + strand, within OH686_13910at 2911.797 kb on - strand, within OH686_13910at 2911.797 kb on - strand, within OH686_13910at 2911.797 kb on - strand, within OH686_13910at 2911.797 kb on - strand, within OH686_13910at 2911.935 kb on - strand, within OH686_13910at 2911.935 kb on - strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.976 kb on + strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2911.977 kb on - strand, within OH686_13910at 2912.096 kb on + strandat 2912.096 kb on + strandat 2912.097 kb on - strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.272 kb on + strandat 2912.273 kb on - strandat 2912.273 kb on - strandat 2912.303 kb on - strandat 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.551 kb on + strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.552 kb on - strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.554 kb on + strand, within OH686_13915at 2912.939 kb on + strand, within OH686_13915at 2912.939 kb on + strand, within OH686_13915at 2912.940 kb on - strand, within OH686_13915at 2913.016 kb on + strand, within OH686_13915at 2913.016 kb on + strand, within OH686_13915at 2913.016 kb on + strand, within OH686_13915at 2913.017 kb on - strand, within OH686_13915at 2913.091 kb on + strand, within OH686_13915at 2913.091 kb on + strand, within OH686_13915at 2913.116 kb on - strand, within OH686_13915at 2913.259 kb on + strand, within OH686_13915at 2913.259 kb on + strand, within OH686_13915at 2913.260 kb on - strand, within OH686_13915at 2913.421 kb on + strandat 2913.421 kb on + strandat 2913.422 kb on - strandat 2913.507 kb on + strandat 2913.512 kb on + strandat 2913.512 kb on + strandat 2913.512 kb on + strandat 2913.570 kb on + strandat 2913.570 kb on + strandat 2913.571 kb on - strandat 2913.620 kb on + strand, within OH686_13920at 2913.620 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.750 kb on - strand, within OH686_13920at 2913.750 kb on - strand, within OH686_13920at 2914.091 kb on + strandat 2914.092 kb on - strandat 2914.092 kb on - strandat 2914.092 kb on - strandat 2914.103 kb on - strandat 2914.165 kb on + strandat 2914.165 kb on + strandat 2914.165 kb on + strandat 2914.166 kb on - strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.266 kb on - strandat 2914.266 kb on - strandat 2914.266 kb on - strandat 2914.266 kb on - strandat 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,911,214 + OH686_13910 0.14 +0.3
2,911,215 - OH686_13910 0.14 -0.8
2,911,215 - OH686_13910 0.14 -0.8
2,911,215 - OH686_13910 0.14 +0.1
2,911,215 - OH686_13910 0.14 +0.4
2,911,546 + OH686_13910 0.43 +0.6
2,911,547 - OH686_13910 0.43 +0.4
2,911,547 - OH686_13910 0.43 +0.6
2,911,547 - OH686_13910 0.43 +0.0
2,911,712 + OH686_13910 0.58 +0.7
2,911,712 + OH686_13910 0.58 +1.0
2,911,712 + OH686_13910 0.58 +0.0
2,911,712 + OH686_13910 0.58 +0.3
2,911,712 + OH686_13910 0.58 +0.4
2,911,712 + OH686_13910 0.58 -0.7
2,911,712 + OH686_13910 0.58 -0.4
2,911,712 + OH686_13910 0.58 +0.8
2,911,712 + OH686_13910 0.58 -0.8
2,911,712 + OH686_13910 0.58 -0.3
2,911,712 + OH686_13910 0.58 -2.0
2,911,712 + OH686_13910 0.58 -0.8
2,911,712 + OH686_13910 0.58 -1.2
2,911,712 + OH686_13910 0.58 +0.5
2,911,713 - OH686_13910 0.58 +0.2
2,911,713 - OH686_13910 0.58 +1.5
2,911,713 - OH686_13910 0.58 +0.0
2,911,713 - OH686_13910 0.58 +0.8
2,911,713 - OH686_13910 0.58 -0.9
2,911,713 - OH686_13910 0.58 -0.1
2,911,713 - OH686_13910 0.58 +0.3
2,911,713 - OH686_13910 0.58 +0.1
2,911,796 + OH686_13910 0.65 -1.2
2,911,797 - OH686_13910 0.65 +0.0
2,911,797 - OH686_13910 0.65 +0.7
2,911,797 - OH686_13910 0.65 -3.1
2,911,797 - OH686_13910 0.65 -0.2
2,911,935 - OH686_13910 0.77 +0.7
2,911,935 - OH686_13910 0.77 +0.5
2,911,976 + OH686_13910 0.81 -1.6
2,911,976 + OH686_13910 0.81 -0.0
2,911,976 + OH686_13910 0.81 -0.2
2,911,976 + OH686_13910 0.81 +0.0
2,911,976 + OH686_13910 0.81 -0.3
2,911,976 + OH686_13910 0.81 +0.4
2,911,976 + OH686_13910 0.81 +0.8
2,911,977 - OH686_13910 0.81 -0.7
2,911,977 - OH686_13910 0.81 -1.1
2,911,977 - OH686_13910 0.81 +0.2
2,911,977 - OH686_13910 0.81 +0.4
2,911,977 - OH686_13910 0.81 -0.2
2,911,977 - OH686_13910 0.81 +0.7
2,911,977 - OH686_13910 0.81 -0.8
2,912,096 + -0.0
2,912,096 + -0.2
2,912,097 - +0.9
2,912,272 + -0.2
2,912,272 + -1.4
2,912,272 + -0.9
2,912,272 + +0.1
2,912,272 + -1.5
2,912,272 + -0.3
2,912,272 + -0.2
2,912,272 + -0.5
2,912,273 - +0.8
2,912,273 - +0.8
2,912,303 - -0.4
2,912,551 + OH686_13915 0.29 -1.9
2,912,551 + OH686_13915 0.29 +0.0
2,912,551 + OH686_13915 0.29 +0.9
2,912,551 + OH686_13915 0.29 -0.4
2,912,551 + OH686_13915 0.29 -0.5
2,912,551 + OH686_13915 0.29 +0.7
2,912,551 + OH686_13915 0.29 -0.3
2,912,551 + OH686_13915 0.29 +0.5
2,912,551 + OH686_13915 0.29 +0.8
2,912,551 + OH686_13915 0.29 -0.8
2,912,551 + OH686_13915 0.29 -1.1
2,912,551 + OH686_13915 0.29 -0.7
2,912,551 + OH686_13915 0.29 -1.1
2,912,551 + OH686_13915 0.29 +1.0
2,912,551 + OH686_13915 0.29 -0.5
2,912,551 + OH686_13915 0.29 -0.6
2,912,552 - OH686_13915 0.29 -0.0
2,912,552 - OH686_13915 0.29 -1.2
2,912,552 - OH686_13915 0.29 -1.1
2,912,552 - OH686_13915 0.29 -1.6
2,912,552 - OH686_13915 0.29 -0.3
2,912,552 - OH686_13915 0.29 +0.0
2,912,552 - OH686_13915 0.29 -1.9
2,912,552 - OH686_13915 0.29 -1.1
2,912,552 - OH686_13915 0.29 +0.2
2,912,552 - OH686_13915 0.29 -2.5
2,912,552 - OH686_13915 0.29 -0.0
2,912,552 - OH686_13915 0.29 +1.2
2,912,552 - OH686_13915 0.29 +0.1
2,912,552 - OH686_13915 0.29 -0.6
2,912,552 - OH686_13915 0.29 -0.5
2,912,552 - OH686_13915 0.29 -0.2
2,912,552 - OH686_13915 0.29 -0.6
2,912,552 - OH686_13915 0.29 -1.3
2,912,552 - OH686_13915 0.29 +0.1
2,912,552 - OH686_13915 0.29 -0.8
2,912,552 - OH686_13915 0.29 +0.5
2,912,552 - OH686_13915 0.29 +0.5
2,912,554 + OH686_13915 0.29 -0.6
2,912,554 + OH686_13915 0.29 +0.4
2,912,554 + OH686_13915 0.29 +0.9
2,912,554 + OH686_13915 0.29 +1.0
2,912,554 + OH686_13915 0.29 -1.7
2,912,554 + OH686_13915 0.29 -0.3
2,912,554 + OH686_13915 0.29 +1.1
2,912,939 + OH686_13915 0.61 -0.7
2,912,939 + OH686_13915 0.61 +0.5
2,912,940 - OH686_13915 0.61 -1.0
2,913,016 + OH686_13915 0.67 +0.4
2,913,016 + OH686_13915 0.67 -0.7
2,913,016 + OH686_13915 0.67 -0.3
2,913,017 - OH686_13915 0.67 -0.4
2,913,091 + OH686_13915 0.73 +2.1
2,913,091 + OH686_13915 0.73 +0.4
2,913,116 - OH686_13915 0.75 +0.5
2,913,259 + OH686_13915 0.87 +2.1
2,913,259 + OH686_13915 0.87 -0.5
2,913,260 - OH686_13915 0.87 -1.4
2,913,421 + +0.1
2,913,421 + -1.2
2,913,422 - -0.8
2,913,507 + +0.3
2,913,512 + -0.5
2,913,512 + -0.8
2,913,512 + +0.3
2,913,570 + +1.4
2,913,570 + -0.1
2,913,571 - -0.6
2,913,620 + OH686_13920 0.15 +0.2
2,913,620 + OH686_13920 0.15 -0.6
2,913,749 + OH686_13920 0.41 +0.3
2,913,749 + OH686_13920 0.41 +0.1
2,913,749 + OH686_13920 0.41 +0.8
2,913,749 + OH686_13920 0.41 -0.7
2,913,749 + OH686_13920 0.41 -1.3
2,913,749 + OH686_13920 0.41 +0.8
2,913,749 + OH686_13920 0.41 +0.6
2,913,749 + OH686_13920 0.41 +0.7
2,913,750 - OH686_13920 0.42 +0.9
2,913,750 - OH686_13920 0.42 +0.5
2,914,091 + -0.2
2,914,092 - +0.2
2,914,092 - +0.4
2,914,092 - +0.3
2,914,103 - -0.5
2,914,165 + -1.3
2,914,165 + +0.5
2,914,165 + -0.0
2,914,166 - -0.8
2,914,186 + -1.0
2,914,186 + -0.6
2,914,186 + -2.1
2,914,186 + -0.4
2,914,186 + -0.4
2,914,265 + +1.0
2,914,265 + +0.3
2,914,265 + +0.4
2,914,265 + -0.2
2,914,265 + +0.7
2,914,265 + +1.3
2,914,265 + +0.7
2,914,265 + +1.1
2,914,265 + +0.9
2,914,265 + +1.0
2,914,265 + +0.2
2,914,265 + -0.0
2,914,265 + +0.1
2,914,266 - -0.0
2,914,266 - +0.5
2,914,266 - -0.7
2,914,266 - -0.1
2,914,399 + OH686_13925 0.37 +0.2
2,914,399 + OH686_13925 0.37 +0.3
2,914,399 + OH686_13925 0.37 -0.2
2,914,399 + OH686_13925 0.37 +0.4
2,914,399 + OH686_13925 0.37 +0.1
2,914,399 + OH686_13925 0.37 +0.7
2,914,399 + OH686_13925 0.37 +0.0
2,914,399 + OH686_13925 0.37 +0.1
2,914,399 + OH686_13925 0.37 +0.7
2,914,399 + OH686_13925 0.37 +0.4
2,914,399 + OH686_13925 0.37 +2.0
2,914,399 + OH686_13925 0.37 +0.8
2,914,399 + OH686_13925 0.37 +2.4
2,914,399 + OH686_13925 0.37 -0.0
2,914,399 + OH686_13925 0.37 -0.3
2,914,399 + OH686_13925 0.37 +0.3
2,914,399 + OH686_13925 0.37 +0.3
2,914,399 + OH686_13925 0.37 +1.0
2,914,399 + OH686_13925 0.37 +0.2
2,914,400 - OH686_13925 0.37 -0.3
2,914,400 - OH686_13925 0.37 +0.1
2,914,400 - OH686_13925 0.37 -0.6
2,914,400 - OH686_13925 0.37 -0.2
2,914,400 - OH686_13925 0.37 +0.1
2,914,400 - OH686_13925 0.37 -0.3
2,914,400 - OH686_13925 0.37 -0.1
2,914,400 - OH686_13925 0.37 +0.3
2,914,400 - OH686_13925 0.37 +0.8
2,914,400 - OH686_13925 0.37 -0.1
2,914,400 - OH686_13925 0.37 -1.2
2,914,400 - OH686_13925 0.37 +1.9
2,914,400 - OH686_13925 0.37 +0.2
2,914,400 - OH686_13925 0.37 +1.4
2,914,400 - OH686_13925 0.37 -0.1
2,914,400 - OH686_13925 0.37 +0.5
2,914,400 - OH686_13925 0.37 +0.4
2,914,400 - OH686_13925 0.37 +0.2
2,914,400 - OH686_13925 0.37 +0.7

Or see this region's nucleotide sequence