Strain Fitness in Pseudomonas sp. S08-1 around OH686_06280

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06275 and OH686_06280 are separated by 3 nucleotidesOH686_06280 and OH686_06285 are separated by 35 nucleotides OH686_06275: OH686_06275 - Probable acyltransferase, at 1,263,239 to 1,264,147 _06275 OH686_06280: OH686_06280 - Sensory box/GGDEF family protein, at 1,264,151 to 1,266,304 _06280 OH686_06285: OH686_06285 - Two-component system sensor histidine kinase, at 1,266,340 to 1,270,095 _06285 Position (kb) 1264 1265 1266 1267Strain fitness (log2 ratio) -2 -1 0 1 2at 1263.503 kb on + strand, within OH686_06275at 1263.503 kb on + strand, within OH686_06275at 1263.503 kb on + strand, within OH686_06275at 1263.503 kb on + strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.504 kb on - strand, within OH686_06275at 1263.554 kb on + strand, within OH686_06275at 1263.554 kb on + strand, within OH686_06275at 1263.555 kb on - strand, within OH686_06275at 1263.555 kb on - strand, within OH686_06275at 1263.555 kb on - strand, within OH686_06275at 1263.555 kb on - strand, within OH686_06275at 1263.555 kb on - strand, within OH686_06275at 1263.668 kb on + strand, within OH686_06275at 1263.668 kb on + strand, within OH686_06275at 1263.668 kb on + strand, within OH686_06275at 1263.669 kb on - strand, within OH686_06275at 1263.669 kb on - strand, within OH686_06275at 1263.669 kb on - strand, within OH686_06275at 1263.680 kb on + strand, within OH686_06275at 1263.680 kb on + strand, within OH686_06275at 1263.680 kb on + strand, within OH686_06275at 1263.680 kb on + strand, within OH686_06275at 1263.681 kb on - strand, within OH686_06275at 1263.681 kb on - strand, within OH686_06275at 1263.681 kb on - strand, within OH686_06275at 1263.681 kb on - strand, within OH686_06275at 1263.681 kb on - strand, within OH686_06275at 1263.692 kb on + strand, within OH686_06275at 1263.746 kb on + strand, within OH686_06275at 1263.746 kb on + strand, within OH686_06275at 1263.746 kb on + strand, within OH686_06275at 1263.747 kb on - strand, within OH686_06275at 1263.747 kb on - strand, within OH686_06275at 1263.837 kb on - strand, within OH686_06275at 1263.837 kb on - strand, within OH686_06275at 1263.837 kb on - strand, within OH686_06275at 1264.034 kb on + strand, within OH686_06275at 1264.035 kb on - strand, within OH686_06275at 1264.035 kb on - strand, within OH686_06275at 1264.035 kb on - strand, within OH686_06275at 1264.035 kb on - strand, within OH686_06275at 1264.267 kb on + strandat 1264.267 kb on + strandat 1264.268 kb on - strandat 1264.268 kb on - strandat 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.424 kb on + strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.425 kb on - strand, within OH686_06280at 1264.459 kb on - strand, within OH686_06280at 1264.459 kb on - strand, within OH686_06280at 1264.459 kb on - strand, within OH686_06280at 1264.473 kb on + strand, within OH686_06280at 1264.474 kb on - strand, within OH686_06280at 1264.899 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.031 kb on + strand, within OH686_06280at 1265.032 kb on - strand, within OH686_06280at 1265.032 kb on - strand, within OH686_06280at 1265.032 kb on - strand, within OH686_06280at 1265.032 kb on - strand, within OH686_06280at 1265.032 kb on - strand, within OH686_06280at 1265.259 kb on + strand, within OH686_06280at 1265.259 kb on + strand, within OH686_06280at 1265.303 kb on + strand, within OH686_06280at 1265.303 kb on + strand, within OH686_06280at 1265.303 kb on + strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.304 kb on - strand, within OH686_06280at 1265.367 kb on + strand, within OH686_06280at 1265.367 kb on + strand, within OH686_06280at 1265.367 kb on + strand, within OH686_06280at 1265.367 kb on + strand, within OH686_06280at 1265.367 kb on + strand, within OH686_06280at 1265.416 kb on + strand, within OH686_06280at 1265.416 kb on + strand, within OH686_06280at 1265.417 kb on - strand, within OH686_06280at 1265.448 kb on + strand, within OH686_06280at 1265.448 kb on + strand, within OH686_06280at 1265.448 kb on + strand, within OH686_06280at 1265.448 kb on + strand, within OH686_06280at 1265.448 kb on + strand, within OH686_06280at 1265.449 kb on - strand, within OH686_06280at 1265.449 kb on - strand, within OH686_06280at 1265.449 kb on - strand, within OH686_06280at 1265.449 kb on - strand, within OH686_06280at 1265.450 kb on - strand, within OH686_06280at 1265.589 kb on + strand, within OH686_06280at 1265.589 kb on + strand, within OH686_06280at 1265.589 kb on + strand, within OH686_06280at 1265.589 kb on + strand, within OH686_06280at 1265.590 kb on - strand, within OH686_06280at 1265.631 kb on + strand, within OH686_06280at 1265.631 kb on + strand, within OH686_06280at 1265.631 kb on + strand, within OH686_06280at 1265.631 kb on + strand, within OH686_06280at 1265.632 kb on - strand, within OH686_06280at 1265.632 kb on - strand, within OH686_06280at 1265.632 kb on - strand, within OH686_06280at 1265.658 kb on + strand, within OH686_06280at 1265.658 kb on + strand, within OH686_06280at 1265.658 kb on + strand, within OH686_06280at 1265.658 kb on + strand, within OH686_06280at 1265.659 kb on - strand, within OH686_06280at 1265.706 kb on + strand, within OH686_06280at 1265.706 kb on + strand, within OH686_06280at 1265.706 kb on + strand, within OH686_06280at 1265.706 kb on + strand, within OH686_06280at 1265.707 kb on - strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.807 kb on + strand, within OH686_06280at 1265.808 kb on - strand, within OH686_06280at 1265.808 kb on - strand, within OH686_06280at 1265.808 kb on - strand, within OH686_06280at 1265.808 kb on - strand, within OH686_06280at 1265.882 kb on + strand, within OH686_06280at 1265.882 kb on + strand, within OH686_06280at 1265.882 kb on + strand, within OH686_06280at 1265.882 kb on + strand, within OH686_06280at 1265.882 kb on + strand, within OH686_06280at 1265.882 kb on + strand, within OH686_06280at 1265.883 kb on - strand, within OH686_06280at 1265.883 kb on - strand, within OH686_06280at 1265.989 kb on - strand, within OH686_06280at 1266.046 kb on + strand, within OH686_06280at 1266.046 kb on + strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.047 kb on - strand, within OH686_06280at 1266.434 kb on + strandat 1266.434 kb on + strandat 1266.434 kb on + strandat 1266.435 kb on - strandat 1266.435 kb on - strandat 1266.435 kb on - strandat 1266.499 kb on + strandat 1266.499 kb on + strandat 1266.499 kb on + strandat 1266.500 kb on - strandat 1266.552 kb on - strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.689 kb on + strandat 1266.690 kb on - strandat 1266.845 kb on + strand, within OH686_06285at 1266.891 kb on + strand, within OH686_06285at 1267.014 kb on - strand, within OH686_06285at 1267.206 kb on - strand, within OH686_06285at 1267.243 kb on + strand, within OH686_06285at 1267.304 kb on + strand, within OH686_06285at 1267.304 kb on + strand, within OH686_06285at 1267.304 kb on + strand, within OH686_06285

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,263,503 + OH686_06275 0.29 +1.6
1,263,503 + OH686_06275 0.29 +0.1
1,263,503 + OH686_06275 0.29 -1.4
1,263,503 + OH686_06275 0.29 +0.1
1,263,504 - OH686_06275 0.29 +0.0
1,263,504 - OH686_06275 0.29 +0.1
1,263,504 - OH686_06275 0.29 +0.6
1,263,504 - OH686_06275 0.29 -0.9
1,263,504 - OH686_06275 0.29 -0.5
1,263,504 - OH686_06275 0.29 -0.3
1,263,504 - OH686_06275 0.29 +0.0
1,263,504 - OH686_06275 0.29 +0.5
1,263,504 - OH686_06275 0.29 +0.1
1,263,504 - OH686_06275 0.29 +0.3
1,263,554 + OH686_06275 0.35 +0.1
1,263,554 + OH686_06275 0.35 -0.9
1,263,555 - OH686_06275 0.35 +1.2
1,263,555 - OH686_06275 0.35 -0.9
1,263,555 - OH686_06275 0.35 -0.0
1,263,555 - OH686_06275 0.35 +0.3
1,263,555 - OH686_06275 0.35 -0.0
1,263,668 + OH686_06275 0.47 +0.9
1,263,668 + OH686_06275 0.47 -0.1
1,263,668 + OH686_06275 0.47 -0.0
1,263,669 - OH686_06275 0.47 -0.2
1,263,669 - OH686_06275 0.47 +0.8
1,263,669 - OH686_06275 0.47 -0.0
1,263,680 + OH686_06275 0.49 +0.2
1,263,680 + OH686_06275 0.49 +1.0
1,263,680 + OH686_06275 0.49 +0.9
1,263,680 + OH686_06275 0.49 -0.1
1,263,681 - OH686_06275 0.49 +0.0
1,263,681 - OH686_06275 0.49 -0.5
1,263,681 - OH686_06275 0.49 -0.0
1,263,681 - OH686_06275 0.49 -0.2
1,263,681 - OH686_06275 0.49 +0.5
1,263,692 + OH686_06275 0.50 -0.4
1,263,746 + OH686_06275 0.56 +0.3
1,263,746 + OH686_06275 0.56 +0.0
1,263,746 + OH686_06275 0.56 +0.1
1,263,747 - OH686_06275 0.56 +0.3
1,263,747 - OH686_06275 0.56 +0.2
1,263,837 - OH686_06275 0.66 +0.3
1,263,837 - OH686_06275 0.66 +0.1
1,263,837 - OH686_06275 0.66 +0.0
1,264,034 + OH686_06275 0.87 -0.3
1,264,035 - OH686_06275 0.88 -0.9
1,264,035 - OH686_06275 0.88 +0.0
1,264,035 - OH686_06275 0.88 -0.5
1,264,035 - OH686_06275 0.88 -0.2
1,264,267 + -0.6
1,264,267 + +0.1
1,264,268 - +1.0
1,264,268 - -0.8
1,264,424 + OH686_06280 0.13 -0.5
1,264,424 + OH686_06280 0.13 +0.5
1,264,424 + OH686_06280 0.13 -0.1
1,264,424 + OH686_06280 0.13 -0.1
1,264,424 + OH686_06280 0.13 +0.9
1,264,424 + OH686_06280 0.13 +0.1
1,264,424 + OH686_06280 0.13 -0.6
1,264,424 + OH686_06280 0.13 -0.4
1,264,425 - OH686_06280 0.13 +0.6
1,264,425 - OH686_06280 0.13 +0.4
1,264,425 - OH686_06280 0.13 +0.8
1,264,425 - OH686_06280 0.13 +1.0
1,264,425 - OH686_06280 0.13 +0.9
1,264,425 - OH686_06280 0.13 -0.3
1,264,425 - OH686_06280 0.13 -2.0
1,264,459 - OH686_06280 0.14 -0.9
1,264,459 - OH686_06280 0.14 -0.7
1,264,459 - OH686_06280 0.14 -0.2
1,264,473 + OH686_06280 0.15 -0.5
1,264,474 - OH686_06280 0.15 -0.1
1,264,899 + OH686_06280 0.35 +0.5
1,265,031 + OH686_06280 0.41 -0.5
1,265,031 + OH686_06280 0.41 -0.8
1,265,031 + OH686_06280 0.41 -1.3
1,265,031 + OH686_06280 0.41 +0.1
1,265,031 + OH686_06280 0.41 -0.4
1,265,031 + OH686_06280 0.41 -0.4
1,265,031 + OH686_06280 0.41 -0.2
1,265,031 + OH686_06280 0.41 +0.3
1,265,031 + OH686_06280 0.41 -0.3
1,265,032 - OH686_06280 0.41 -1.2
1,265,032 - OH686_06280 0.41 +0.1
1,265,032 - OH686_06280 0.41 +0.4
1,265,032 - OH686_06280 0.41 -0.5
1,265,032 - OH686_06280 0.41 -1.4
1,265,259 + OH686_06280 0.51 +0.3
1,265,259 + OH686_06280 0.51 +0.2
1,265,303 + OH686_06280 0.53 +0.1
1,265,303 + OH686_06280 0.53 -0.6
1,265,303 + OH686_06280 0.53 +0.4
1,265,304 - OH686_06280 0.54 -0.3
1,265,304 - OH686_06280 0.54 -0.2
1,265,304 - OH686_06280 0.54 +0.1
1,265,304 - OH686_06280 0.54 -0.2
1,265,304 - OH686_06280 0.54 -0.2
1,265,304 - OH686_06280 0.54 +0.4
1,265,304 - OH686_06280 0.54 +1.0
1,265,304 - OH686_06280 0.54 +0.2
1,265,304 - OH686_06280 0.54 -0.2
1,265,304 - OH686_06280 0.54 +1.1
1,265,367 + OH686_06280 0.56 -0.2
1,265,367 + OH686_06280 0.56 +0.8
1,265,367 + OH686_06280 0.56 -0.2
1,265,367 + OH686_06280 0.56 +0.0
1,265,367 + OH686_06280 0.56 -0.1
1,265,416 + OH686_06280 0.59 +0.3
1,265,416 + OH686_06280 0.59 +0.1
1,265,417 - OH686_06280 0.59 +0.4
1,265,448 + OH686_06280 0.60 +0.2
1,265,448 + OH686_06280 0.60 +0.1
1,265,448 + OH686_06280 0.60 +0.5
1,265,448 + OH686_06280 0.60 +0.5
1,265,448 + OH686_06280 0.60 +1.0
1,265,449 - OH686_06280 0.60 +0.1
1,265,449 - OH686_06280 0.60 -1.4
1,265,449 - OH686_06280 0.60 -0.4
1,265,449 - OH686_06280 0.60 -0.9
1,265,450 - OH686_06280 0.60 -0.7
1,265,589 + OH686_06280 0.67 +0.3
1,265,589 + OH686_06280 0.67 +0.2
1,265,589 + OH686_06280 0.67 -0.8
1,265,589 + OH686_06280 0.67 +0.1
1,265,590 - OH686_06280 0.67 -0.7
1,265,631 + OH686_06280 0.69 +0.8
1,265,631 + OH686_06280 0.69 -0.6
1,265,631 + OH686_06280 0.69 +0.3
1,265,631 + OH686_06280 0.69 -0.3
1,265,632 - OH686_06280 0.69 +0.1
1,265,632 - OH686_06280 0.69 -0.4
1,265,632 - OH686_06280 0.69 -0.8
1,265,658 + OH686_06280 0.70 +1.1
1,265,658 + OH686_06280 0.70 +0.2
1,265,658 + OH686_06280 0.70 +1.0
1,265,658 + OH686_06280 0.70 +0.2
1,265,659 - OH686_06280 0.70 -0.4
1,265,706 + OH686_06280 0.72 -0.1
1,265,706 + OH686_06280 0.72 -0.4
1,265,706 + OH686_06280 0.72 +0.5
1,265,706 + OH686_06280 0.72 +0.5
1,265,707 - OH686_06280 0.72 +0.7
1,265,807 + OH686_06280 0.77 -0.1
1,265,807 + OH686_06280 0.77 -0.5
1,265,807 + OH686_06280 0.77 -0.5
1,265,807 + OH686_06280 0.77 -0.1
1,265,807 + OH686_06280 0.77 +0.3
1,265,807 + OH686_06280 0.77 +1.2
1,265,807 + OH686_06280 0.77 -1.5
1,265,808 - OH686_06280 0.77 +0.4
1,265,808 - OH686_06280 0.77 +0.2
1,265,808 - OH686_06280 0.77 -1.9
1,265,808 - OH686_06280 0.77 -0.2
1,265,882 + OH686_06280 0.80 -1.1
1,265,882 + OH686_06280 0.80 +0.7
1,265,882 + OH686_06280 0.80 +0.0
1,265,882 + OH686_06280 0.80 -0.3
1,265,882 + OH686_06280 0.80 -0.5
1,265,882 + OH686_06280 0.80 -0.5
1,265,883 - OH686_06280 0.80 -1.1
1,265,883 - OH686_06280 0.80 +0.6
1,265,989 - OH686_06280 0.85 -0.7
1,266,046 + OH686_06280 0.88 -1.4
1,266,046 + OH686_06280 0.88 +0.3
1,266,047 - OH686_06280 0.88 -1.1
1,266,047 - OH686_06280 0.88 -0.7
1,266,047 - OH686_06280 0.88 -0.4
1,266,047 - OH686_06280 0.88 -1.6
1,266,047 - OH686_06280 0.88 +1.4
1,266,047 - OH686_06280 0.88 +0.5
1,266,047 - OH686_06280 0.88 +0.8
1,266,047 - OH686_06280 0.88 -0.1
1,266,434 + -0.1
1,266,434 + +0.6
1,266,434 + -0.4
1,266,435 - -0.5
1,266,435 - -0.1
1,266,435 - -2.4
1,266,499 + -0.1
1,266,499 + +1.8
1,266,499 + +1.1
1,266,500 - +0.4
1,266,552 - +0.2
1,266,689 + -0.2
1,266,689 + -0.2
1,266,689 + -0.5
1,266,689 + -0.4
1,266,689 + -0.2
1,266,689 + -0.2
1,266,689 + +0.2
1,266,689 + -0.1
1,266,690 - -1.2
1,266,845 + OH686_06285 0.13 +0.3
1,266,891 + OH686_06285 0.15 -1.9
1,267,014 - OH686_06285 0.18 +0.5
1,267,206 - OH686_06285 0.23 +1.2
1,267,243 + OH686_06285 0.24 +1.1
1,267,304 + OH686_06285 0.26 -0.6
1,267,304 + OH686_06285 0.26 -0.7
1,267,304 + OH686_06285 0.26 -0.1

Or see this region's nucleotide sequence