Strain Fitness in Pseudomonas sp. S08-1 around OH686_04305

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04300 and OH686_04305 are separated by 3 nucleotidesOH686_04305 and OH686_04310 overlap by 104 nucleotidesOH686_04310 and OH686_04315 are separated by 56 nucleotides OH686_04300: OH686_04300 - hypothetical protein, at 891,810 to 892,739 _04300 OH686_04305: OH686_04305 - hypothetical protein, at 892,743 to 893,972 _04305 OH686_04310: OH686_04310 - pyridoxal phosphate-dependent deaminase, putative, at 893,869 to 894,822 _04310 OH686_04315: OH686_04315 - ATPase, at 894,879 to 896,243 _04315 Position (kb) 892 893 894Strain fitness (log2 ratio) -2 -1 0 1 2at 891.760 kb on - strandat 891.760 kb on - strandat 891.798 kb on + strandat 892.050 kb on + strand, within OH686_04300at 892.050 kb on + strand, within OH686_04300at 892.051 kb on - strand, within OH686_04300at 892.053 kb on + strand, within OH686_04300at 892.053 kb on + strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.212 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.413 kb on + strand, within OH686_04300at 892.413 kb on + strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.539 kb on - strand, within OH686_04300at 892.737 kb on + strandat 892.737 kb on + strandat 892.738 kb on - strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.742 kb on - strandat 892.742 kb on - strandat 892.761 kb on - strandat 892.783 kb on + strandat 892.783 kb on + strandat 892.784 kb on - strandat 892.821 kb on + strandat 892.859 kb on - strandat 892.925 kb on - strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 893.020 kb on + strand, within OH686_04305at 893.021 kb on - strand, within OH686_04305at 893.021 kb on - strand, within OH686_04305at 893.021 kb on - strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.309 kb on - strand, within OH686_04305at 893.309 kb on - strand, within OH686_04305at 893.551 kb on - strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.746 kb on - strand, within OH686_04305at 893.813 kb on + strand, within OH686_04305at 893.814 kb on - strand, within OH686_04305at 893.814 kb on - strand, within OH686_04305at 893.870 kb on + strandat 893.870 kb on + strandat 893.871 kb on - strandat 893.871 kb on - strandat 893.871 kb on - strandat 893.881 kb on + strandat 893.881 kb on + strandat 893.881 kb on + strandat 893.882 kb on - strandat 893.882 kb on - strandat 893.975 kb on + strand, within OH686_04310at 894.023 kb on + strand, within OH686_04310at 894.023 kb on + strand, within OH686_04310at 894.024 kb on - strand, within OH686_04310at 894.346 kb on + strand, within OH686_04310at 894.346 kb on + strand, within OH686_04310at 894.347 kb on - strand, within OH686_04310at 894.347 kb on - strand, within OH686_04310at 894.347 kb on - strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.348 kb on + strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.349 kb on - strand, within OH686_04310at 894.667 kb on - strand, within OH686_04310at 894.816 kb on + strandat 894.816 kb on + strandat 894.816 kb on + strandat 894.817 kb on - strandat 894.817 kb on - strandat 894.817 kb on - strandat 894.817 kb on - strandat 894.817 kb on - strandat 894.817 kb on - strandat 894.817 kb on - strandat 894.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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891,760 - -0.4
891,760 - -0.4
891,798 + -0.2
892,050 + OH686_04300 0.26 -0.0
892,050 + OH686_04300 0.26 -1.0
892,051 - OH686_04300 0.26 +0.6
892,053 + OH686_04300 0.26 -0.0
892,053 + OH686_04300 0.26 -1.0
892,054 - OH686_04300 0.26 +0.9
892,054 - OH686_04300 0.26 -0.1
892,054 - OH686_04300 0.26 +0.7
892,139 + OH686_04300 0.35 +0.3
892,139 + OH686_04300 0.35 -0.1
892,139 + OH686_04300 0.35 -0.9
892,140 - OH686_04300 0.35 -0.7
892,140 - OH686_04300 0.35 -0.8
892,140 - OH686_04300 0.35 -0.3
892,212 + OH686_04300 0.43 -0.7
892,404 + OH686_04300 0.64 -0.5
892,404 + OH686_04300 0.64 -0.9
892,404 + OH686_04300 0.64 +0.7
892,405 - OH686_04300 0.64 -0.6
892,405 - OH686_04300 0.64 -0.5
892,405 - OH686_04300 0.64 -0.0
892,413 + OH686_04300 0.65 -0.8
892,413 + OH686_04300 0.65 -0.8
892,414 - OH686_04300 0.65 +0.3
892,414 - OH686_04300 0.65 -0.3
892,414 - OH686_04300 0.65 +0.8
892,414 - OH686_04300 0.65 -0.2
892,539 - OH686_04300 0.78 -0.2
892,737 + +0.9
892,737 + -0.2
892,738 - +0.5
892,741 + +0.7
892,741 + -1.2
892,741 + -0.5
892,741 + +1.0
892,741 + -0.2
892,741 + -2.5
892,741 + +0.7
892,742 - +0.4
892,742 - +0.3
892,761 - +0.2
892,783 + -0.3
892,783 + +1.0
892,784 - -1.7
892,821 + -0.7
892,859 - -0.8
892,925 - OH686_04305 0.15 -0.6
892,933 + OH686_04305 0.15 -0.5
892,933 + OH686_04305 0.15 +0.1
892,933 + OH686_04305 0.15 +0.2
892,933 + OH686_04305 0.15 -0.1
892,933 + OH686_04305 0.15 -0.4
892,934 - OH686_04305 0.16 -0.3
892,934 - OH686_04305 0.16 -1.7
892,934 - OH686_04305 0.16 -0.1
892,934 - OH686_04305 0.16 +0.2
892,971 + OH686_04305 0.19 +0.0
892,971 + OH686_04305 0.19 +0.3
892,971 + OH686_04305 0.19 +0.1
892,971 + OH686_04305 0.19 +0.0
892,971 + OH686_04305 0.19 +1.1
892,971 + OH686_04305 0.19 -1.1
892,971 + OH686_04305 0.19 -0.7
892,971 + OH686_04305 0.19 -1.4
892,971 + OH686_04305 0.19 -0.3
892,972 - OH686_04305 0.19 -0.1
892,972 - OH686_04305 0.19 -0.7
892,972 - OH686_04305 0.19 +0.1
892,972 - OH686_04305 0.19 -0.0
892,972 - OH686_04305 0.19 -0.1
892,972 - OH686_04305 0.19 -0.1
892,972 - OH686_04305 0.19 -0.4
893,020 + OH686_04305 0.23 -0.0
893,021 - OH686_04305 0.23 +0.3
893,021 - OH686_04305 0.23 +0.8
893,021 - OH686_04305 0.23 -0.6
893,308 + OH686_04305 0.46 +0.3
893,308 + OH686_04305 0.46 +0.5
893,308 + OH686_04305 0.46 -0.2
893,308 + OH686_04305 0.46 -0.7
893,308 + OH686_04305 0.46 -0.1
893,308 + OH686_04305 0.46 -0.7
893,309 - OH686_04305 0.46 +0.4
893,309 - OH686_04305 0.46 +1.2
893,551 - OH686_04305 0.66 -0.1
893,692 + OH686_04305 0.77 -0.0
893,692 + OH686_04305 0.77 +0.6
893,692 + OH686_04305 0.77 +0.1
893,692 + OH686_04305 0.77 -0.5
893,692 + OH686_04305 0.77 +0.7
893,692 + OH686_04305 0.77 -1.2
893,693 - OH686_04305 0.77 -0.5
893,693 - OH686_04305 0.77 -0.3
893,693 - OH686_04305 0.77 +1.7
893,693 - OH686_04305 0.77 +0.9
893,693 - OH686_04305 0.77 +0.6
893,693 - OH686_04305 0.77 -0.5
893,693 - OH686_04305 0.77 +0.3
893,695 + OH686_04305 0.77 +0.2
893,695 + OH686_04305 0.77 +0.1
893,695 + OH686_04305 0.77 +0.6
893,695 + OH686_04305 0.77 -0.5
893,695 + OH686_04305 0.77 -1.1
893,695 + OH686_04305 0.77 -0.7
893,695 + OH686_04305 0.77 -0.9
893,695 + OH686_04305 0.77 +0.2
893,696 - OH686_04305 0.77 -0.1
893,696 - OH686_04305 0.77 -0.4
893,696 - OH686_04305 0.77 -0.8
893,696 - OH686_04305 0.77 +0.2
893,696 - OH686_04305 0.77 +0.2
893,696 - OH686_04305 0.77 -0.4
893,696 - OH686_04305 0.77 -0.8
893,696 - OH686_04305 0.77 +0.0
893,696 - OH686_04305 0.77 -0.3
893,696 - OH686_04305 0.77 -0.0
893,746 - OH686_04305 0.82 -0.7
893,813 + OH686_04305 0.87 +0.3
893,814 - OH686_04305 0.87 +1.0
893,814 - OH686_04305 0.87 -0.4
893,870 + +0.1
893,870 + +0.8
893,871 - +0.3
893,871 - +0.2
893,871 - -0.4
893,881 + +0.3
893,881 + +0.7
893,881 + +0.3
893,882 - -0.0
893,882 - -0.7
893,975 + OH686_04310 0.11 -0.6
894,023 + OH686_04310 0.16 -0.0
894,023 + OH686_04310 0.16 +1.0
894,024 - OH686_04310 0.16 -0.8
894,346 + OH686_04310 0.50 -0.4
894,346 + OH686_04310 0.50 -1.2
894,347 - OH686_04310 0.50 +1.2
894,347 - OH686_04310 0.50 -0.5
894,347 - OH686_04310 0.50 -1.1
894,348 + OH686_04310 0.50 -0.4
894,348 + OH686_04310 0.50 +0.4
894,348 + OH686_04310 0.50 +0.2
894,348 + OH686_04310 0.50 +0.5
894,348 + OH686_04310 0.50 -0.7
894,348 + OH686_04310 0.50 +0.6
894,348 + OH686_04310 0.50 +0.2
894,348 + OH686_04310 0.50 -0.1
894,348 + OH686_04310 0.50 +0.1
894,348 + OH686_04310 0.50 +0.1
894,348 + OH686_04310 0.50 -0.2
894,348 + OH686_04310 0.50 +0.4
894,348 + OH686_04310 0.50 -0.7
894,348 + OH686_04310 0.50 -0.9
894,349 - OH686_04310 0.50 -0.1
894,349 - OH686_04310 0.50 +1.8
894,349 - OH686_04310 0.50 +0.3
894,349 - OH686_04310 0.50 +0.5
894,349 - OH686_04310 0.50 +0.4
894,349 - OH686_04310 0.50 +0.0
894,349 - OH686_04310 0.50 +0.3
894,349 - OH686_04310 0.50 -0.5
894,349 - OH686_04310 0.50 +0.2
894,349 - OH686_04310 0.50 +0.5
894,349 - OH686_04310 0.50 -0.7
894,349 - OH686_04310 0.50 +0.3
894,349 - OH686_04310 0.50 -0.1
894,349 - OH686_04310 0.50 +0.3
894,349 - OH686_04310 0.50 -1.4
894,349 - OH686_04310 0.50 +0.1
894,349 - OH686_04310 0.50 -0.3
894,349 - OH686_04310 0.50 +0.3
894,349 - OH686_04310 0.50 +0.4
894,349 - OH686_04310 0.50 +0.5
894,349 - OH686_04310 0.50 +0.8
894,667 - OH686_04310 0.84 +0.1
894,816 + +1.2
894,816 + +0.2
894,816 + +0.9
894,817 - +0.6
894,817 - +0.0
894,817 - +0.9
894,817 - -0.5
894,817 - +0.2
894,817 - -0.1
894,817 - -0.1
894,817 - +0.8

Or see this region's nucleotide sequence